STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epaPPutative secreted protein; yscR: type III secretion apparatus protein, YscR/HrcR family (217 aa)    
Predicted Functional Partners:
epaR
Yop proteins translocation protein T; fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT
 
 
 0.998
yscU
annotation not available
  
 0.995
PscS
Putative translocation protein in type iii secretion; Uncharacterized protein; fliQ_rel_III: type III secretion , HrpO family protein
 
 
 0.992
pcrD
hrcV: type III secretion , HrcV family protein
 
 
 0.975
epaO
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family
 
  
 0.966
pscJ
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family
 
 
 0.915
flhB
Flagellar biosynthetic protein flhb; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
 
 0.915
PscN
Putative ATP synthase YscN; III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
  
 0.885
fliN
FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation (By similarity)
  
 0.865
pscP
type_III_yscP: type III secretion system needle length determinant
  
  
 0.864
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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