DR97_1948 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DR97_1948

Putative lipoprotein (195 aa)

Predicted Functional Partners:

DR97_1583

0.764

DR97_489

0.743

amrZ

0.734

DR97_2015

0.719

DR97_1536

0.708

DR97_3806

0.708

DR97_4675

0.707

DR97_4739

0.699

DR97_4428

0.695

DR97_2347

0.694

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_1536	DR97_1583	DR97_1536	DR97_1583	annotation not available	RNA-binding protein	0.661
DR97_1536	DR97_1948	DR97_1536	DR97_1948	annotation not available	Putative lipoprotein	0.708
DR97_1536	DR97_2015	DR97_1536	DR97_2015	annotation not available	Uncharacterized protein	0.781
DR97_1536	DR97_2347	DR97_1536	DR97_2347	annotation not available	Metal ABC transporter ATPase	0.781
DR97_1536	DR97_3806	DR97_1536	DR97_3806	annotation not available	Uncharacterized protein	0.783
DR97_1536	DR97_4428	DR97_1536	DR97_4428	annotation not available	Leucyl-tRNA synthetase	0.779
DR97_1536	DR97_4675	DR97_1536	DR97_4675	annotation not available	Uncharacterized protein	0.781
DR97_1536	DR97_4739	DR97_1536	DR97_4739	annotation not available	Uncharacterized protein	0.778
DR97_1536	DR97_489	DR97_1536	DR97_489	annotation not available	MFS transporter	0.783
DR97_1536	amrZ	DR97_1536	DR97_4537	annotation not available	annotation not available	0.760
DR97_1583	DR97_1536	DR97_1583	DR97_1536	RNA-binding protein	annotation not available	0.661
DR97_1583	DR97_1948	DR97_1583	DR97_1948	RNA-binding protein	Putative lipoprotein	0.764
DR97_1583	DR97_2015	DR97_1583	DR97_2015	RNA-binding protein	Uncharacterized protein	0.642
DR97_1583	DR97_2347	DR97_1583	DR97_2347	RNA-binding protein	Metal ABC transporter ATPase	0.622
DR97_1583	DR97_3806	DR97_1583	DR97_3806	RNA-binding protein	Uncharacterized protein	0.658
DR97_1583	DR97_4428	DR97_1583	DR97_4428	RNA-binding protein	Leucyl-tRNA synthetase	0.623
DR97_1583	DR97_4675	DR97_1583	DR97_4675	RNA-binding protein	Uncharacterized protein	0.667
DR97_1583	DR97_4739	DR97_1583	DR97_4739	RNA-binding protein	Uncharacterized protein	0.676
DR97_1583	DR97_489	DR97_1583	DR97_489	RNA-binding protein	MFS transporter	0.715
DR97_1583	amrZ	DR97_1583	DR97_4537	RNA-binding protein	annotation not available	0.648

page 1 of 6

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2020

Credits

Access

Info

About