Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_1630 | DR97_2041 | DR97_1630 | DR97_2041 | annotation not available | annotation not available | 0.681 |
DR97_1630 | DR97_2345 | DR97_1630 | DR97_2345 | annotation not available | Fad dependent oxidoreductase family protein; Probably functions as a FAD-dependent oxidoreductase, whose physiological substrate is unknown. Does not display amino-acid oxidase or glycerol-3-phosphate dehydrogenase activities . Is essential for growth of P.aeruginosa in the sputum of cystic fibrosis patients | 0.493 |
DR97_1630 | DR97_2392 | DR97_1630 | DR97_2392 | annotation not available | annotation not available | 0.667 |
DR97_1630 | DR97_3272 | DR97_1630 | DR97_3272 | annotation not available | Hypothetical protein; Uncharacterized protein | 0.758 |
DR97_1630 | DR97_4428 | DR97_1630 | DR97_4428 | annotation not available | Hypothetical protein; Leucyl-tRNA synthetase | 0.771 |
DR97_1630 | DR97_5086 | DR97_1630 | DR97_5086 | annotation not available | Hypothetical protein; Uncharacterized protein | 0.769 |
DR97_1630 | DR97_938 | DR97_1630 | DR97_938 | annotation not available | annotation not available | 0.688 |
DR97_1630 | amrZ | DR97_1630 | DR97_4537 | annotation not available | Arc-like dna binding domain protein; Functions as both a transcriptional activator and repressor of multiple genes encoding virulence factors as well as genes involved in environmental adaptation Plays a role in alginate production via the activation of AlgD which is the first gene in the alginate biosynthetic operon . Regulates also the transcription of genes responsible for type IV pili localization and twitching motility . Mediates transition of P.aeruginosa biofilm infections from colonizing to chronic biofilms through repression of the psl operon . Represses also its own transcrip [...] | 0.728 |
DR97_2040 | DR97_2041 | DR97_2040 | DR97_2041 | annotation not available | annotation not available | 0.898 |
DR97_2040 | mrcB | DR97_2040 | DR97_2042 | annotation not available | Penicillin-binding protein 1b; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits) | 0.773 |
DR97_2041 | DR97_1630 | DR97_2041 | DR97_1630 | annotation not available | annotation not available | 0.681 |
DR97_2041 | DR97_2040 | DR97_2041 | DR97_2040 | annotation not available | annotation not available | 0.898 |
DR97_2041 | DR97_2345 | DR97_2041 | DR97_2345 | annotation not available | Fad dependent oxidoreductase family protein; Probably functions as a FAD-dependent oxidoreductase, whose physiological substrate is unknown. Does not display amino-acid oxidase or glycerol-3-phosphate dehydrogenase activities . Is essential for growth of P.aeruginosa in the sputum of cystic fibrosis patients | 0.685 |
DR97_2041 | DR97_2392 | DR97_2041 | DR97_2392 | annotation not available | annotation not available | 0.661 |
DR97_2041 | DR97_3272 | DR97_2041 | DR97_3272 | annotation not available | Hypothetical protein; Uncharacterized protein | 0.665 |
DR97_2041 | DR97_4428 | DR97_2041 | DR97_4428 | annotation not available | Hypothetical protein; Leucyl-tRNA synthetase | 0.652 |
DR97_2041 | DR97_5086 | DR97_2041 | DR97_5086 | annotation not available | Hypothetical protein; Uncharacterized protein | 0.654 |
DR97_2041 | DR97_938 | DR97_2041 | DR97_938 | annotation not available | annotation not available | 0.685 |
DR97_2041 | amrZ | DR97_2041 | DR97_4537 | annotation not available | Arc-like dna binding domain protein; Functions as both a transcriptional activator and repressor of multiple genes encoding virulence factors as well as genes involved in environmental adaptation Plays a role in alginate production via the activation of AlgD which is the first gene in the alginate biosynthetic operon . Regulates also the transcription of genes responsible for type IV pili localization and twitching motility . Mediates transition of P.aeruginosa biofilm infections from colonizing to chronic biofilms through repression of the psl operon . Represses also its own transcrip [...] | 0.692 |
DR97_2041 | mrcB | DR97_2041 | DR97_2042 | annotation not available | Penicillin-binding protein 1b; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits) | 0.841 |
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