Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_206 | DR97_208 | DR97_206 | DR97_208 | annotation not available | annotation not available | 0.565 |
DR97_206 | aroC | DR97_206 | DR97_207 | annotation not available | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system | 0.757 |
DR97_206 | mtnB | DR97_206 | DR97_205 | annotation not available | Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) | 0.875 |
DR97_206 | mtnC | DR97_206 | DR97_203 | annotation not available | 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) | 0.727 |
DR97_206 | mtnD | DR97_206 | DR97_204 | annotation not available | Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway | 0.867 |
DR97_208 | DR97_206 | DR97_208 | DR97_206 | annotation not available | annotation not available | 0.565 |
DR97_208 | DR97_209 | DR97_208 | DR97_209 | annotation not available | Hypothetical protein; Uncharacterized protein | 0.683 |
DR97_208 | DR97_4603 | DR97_208 | DR97_4603 | annotation not available | annotation not available | 0.528 |
DR97_208 | DR97_5217 | DR97_208 | DR97_5217 | annotation not available | annotation not available | 0.512 |
DR97_208 | DR97_5670 | DR97_208 | DR97_5670 | annotation not available | annotation not available | 0.620 |
DR97_208 | aroC | DR97_208 | DR97_207 | annotation not available | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system | 0.660 |
DR97_208 | gmk | DR97_208 | DR97_2707 | annotation not available | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP | 0.605 |
DR97_208 | mtnB | DR97_208 | DR97_205 | annotation not available | Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) | 0.574 |
DR97_208 | mtnC | DR97_208 | DR97_203 | annotation not available | 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) | 0.540 |
DR97_208 | mtnD | DR97_208 | DR97_204 | annotation not available | Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway | 0.566 |
DR97_209 | DR97_208 | DR97_209 | DR97_208 | Hypothetical protein; Uncharacterized protein | annotation not available | 0.683 |
DR97_209 | aroC | DR97_209 | DR97_207 | Hypothetical protein; Uncharacterized protein | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system | 0.474 |
DR97_4603 | DR97_208 | DR97_4603 | DR97_208 | annotation not available | annotation not available | 0.528 |
DR97_4603 | DR97_5670 | DR97_4603 | DR97_5670 | annotation not available | annotation not available | 0.510 |
DR97_4603 | gmk | DR97_4603 | DR97_2707 | annotation not available | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP | 0.585 |
page 1 of 3