Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| bamE | fur | DR97_2109 | DR97_2108 | Outer membrane protein assembly factor bame; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (By similarity). May have a structural role in maintaining the cell envelope integrity | Fur family transcriptional regulator, ferric uptake regulator; Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon. Involved in exotoxin A regulation, siderophore regulation and manganese susceptibility | 0.726 |
| feoB | fur | DR97_1534 | DR97_2108 | Ferrous iron transport protein b; Probable transporter of a GTP-driven Fe(2+) uptake system | Fur family transcriptional regulator, ferric uptake regulator; Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon. Involved in exotoxin A regulation, siderophore regulation and manganese susceptibility | 0.590 |
| feoB | hemH | DR97_1534 | DR97_1964 | Ferrous iron transport protein b; Probable transporter of a GTP-driven Fe(2+) uptake system | Protoporphyrin/coproporphyrin ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX | 0.590 |
| feoB | iscA | DR97_1534 | DR97_4057 | Ferrous iron transport protein b; Probable transporter of a GTP-driven Fe(2+) uptake system | Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system | 0.562 |
| fur | bamE | DR97_2108 | DR97_2109 | Fur family transcriptional regulator, ferric uptake regulator; Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon. Involved in exotoxin A regulation, siderophore regulation and manganese susceptibility | Outer membrane protein assembly factor bame; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (By similarity). May have a structural role in maintaining the cell envelope integrity | 0.726 |
| fur | feoB | DR97_2108 | DR97_1534 | Fur family transcriptional regulator, ferric uptake regulator; Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon. Involved in exotoxin A regulation, siderophore regulation and manganese susceptibility | Ferrous iron transport protein b; Probable transporter of a GTP-driven Fe(2+) uptake system | 0.590 |
| fur | hemH | DR97_2108 | DR97_1964 | Fur family transcriptional regulator, ferric uptake regulator; Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon. Involved in exotoxin A regulation, siderophore regulation and manganese susceptibility | Protoporphyrin/coproporphyrin ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX | 0.527 |
| fur | iscA | DR97_2108 | DR97_4057 | Fur family transcriptional regulator, ferric uptake regulator; Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon. Involved in exotoxin A regulation, siderophore regulation and manganese susceptibility | Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system | 0.536 |
| fur | polA | DR97_2108 | DR97_2871 | Fur family transcriptional regulator, ferric uptake regulator; Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon. Involved in exotoxin A regulation, siderophore regulation and manganese susceptibility | In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity | 0.543 |
| fur | rpmC | DR97_2108 | DR97_3656 | Fur family transcriptional regulator, ferric uptake regulator; Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon. Involved in exotoxin A regulation, siderophore regulation and manganese susceptibility | Large subunit ribosomal protein l29; Belongs to the universal ribosomal protein uL29 family | 0.709 |
| fur | rpoS | DR97_2108 | DR97_4317 | Fur family transcriptional regulator, ferric uptake regulator; Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon. Involved in exotoxin A regulation, siderophore regulation and manganese susceptibility | Rna polymerase nonessential primary-like sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response | 0.545 |
| fur | ssb | DR97_2108 | DR97_3679 | Fur family transcriptional regulator, ferric uptake regulator; Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon. Involved in exotoxin A regulation, siderophore regulation and manganese susceptibility | Single-stranded dna-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism | 0.511 |
| fur | sseA | DR97_2108 | DR97_643 | Fur family transcriptional regulator, ferric uptake regulator; Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon. Involved in exotoxin A regulation, siderophore regulation and manganese susceptibility | Thiosulfate/3-mercaptopyruvate sulfurtransferase; Transfers a sulfur ion to cyanide or to other thiol compounds | 0.582 |
| fur | xerD | DR97_2108 | DR97_4138 | Fur family transcriptional regulator, ferric uptake regulator; Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon. Involved in exotoxin A regulation, siderophore regulation and manganese susceptibility | Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids | 0.549 |
| hemH | feoB | DR97_1964 | DR97_1534 | Protoporphyrin/coproporphyrin ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX | Ferrous iron transport protein b; Probable transporter of a GTP-driven Fe(2+) uptake system | 0.590 |
| hemH | fur | DR97_1964 | DR97_2108 | Protoporphyrin/coproporphyrin ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX | Fur family transcriptional regulator, ferric uptake regulator; Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon. Involved in exotoxin A regulation, siderophore regulation and manganese susceptibility | 0.527 |
| hemH | polA | DR97_1964 | DR97_2871 | Protoporphyrin/coproporphyrin ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX | In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity | 0.634 |
| hemH | rpoS | DR97_1964 | DR97_4317 | Protoporphyrin/coproporphyrin ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX | Rna polymerase nonessential primary-like sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response | 0.556 |
| iscA | feoB | DR97_4057 | DR97_1534 | Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system | Ferrous iron transport protein b; Probable transporter of a GTP-driven Fe(2+) uptake system | 0.562 |
| iscA | fur | DR97_4057 | DR97_2108 | Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system | Fur family transcriptional regulator, ferric uptake regulator; Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon. Involved in exotoxin A regulation, siderophore regulation and manganese susceptibility | 0.536 |
page 1 of 2
