YedA protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

YedA

annotation not available (296 aa)

Predicted Functional Partners:

DR97_4623

0.854

DR97_2129

0.756

DR97_2127

0.738

DR97_1308

0.728

DR97_5572

0.728

pbpG

0.688

DR97_2126

0.518

spoOJ

0.485

PsiF

0.478

DR97_2125

0.441

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_1308	DR97_4623	DR97_1308	DR97_4623	topB: DNA topoisomerase III family protein	annotation not available	0.683
DR97_1308	YedA	DR97_1308	DR97_2128	topB: DNA topoisomerase III family protein	annotation not available	0.728
DR97_1308	spoOJ	DR97_1308	DR97_2941	topB: DNA topoisomerase III family protein	Parb family transcriptional regulator, chromosome partitioning protein; parB_part: ParB/RepB/Spo0J family partition domain protein; Belongs to the ParB family	0.766
DR97_2125	DR97_2126	DR97_2125	DR97_2126	annotation not available	Putative two-component system response regulator; Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic diguanylate (c-di-GMP) to GMP Hydrolyzes c-di-GMP to GMP in a two-step reaction, via the linear intermediate 5'-phosphoguanylyl(3'->5')guanosine (pGpG). In vitro, can use pGpG as an alternative substrate and hydrolyze it into GMP . Acts in regulation of motility, synthesis of virulence determinants and biofilm architecture . May act preferentially as a pGpG binding protein	0.557
DR97_2125	YedA	DR97_2125	DR97_2128	annotation not available	annotation not available	0.441
DR97_2126	DR97_2125	DR97_2126	DR97_2125	Putative two-component system response regulator; Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic diguanylate (c-di-GMP) to GMP Hydrolyzes c-di-GMP to GMP in a two-step reaction, via the linear intermediate 5'-phosphoguanylyl(3'->5')guanosine (pGpG). In vitro, can use pGpG as an alternative substrate and hydrolyze it into GMP . Acts in regulation of motility, synthesis of virulence determinants and biofilm architecture . May act preferentially as a pGpG binding protein	annotation not available	0.557
DR97_2126	DR97_2127	DR97_2126	DR97_2127	Putative two-component system response regulator; Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic diguanylate (c-di-GMP) to GMP Hydrolyzes c-di-GMP to GMP in a two-step reaction, via the linear intermediate 5'-phosphoguanylyl(3'->5')guanosine (pGpG). In vitro, can use pGpG as an alternative substrate and hydrolyze it into GMP . Acts in regulation of motility, synthesis of virulence determinants and biofilm architecture . May act preferentially as a pGpG binding protein	Hypothetical protein; Putative secreted protein	0.573
DR97_2126	YedA	DR97_2126	DR97_2128	Putative two-component system response regulator; Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic diguanylate (c-di-GMP) to GMP Hydrolyzes c-di-GMP to GMP in a two-step reaction, via the linear intermediate 5'-phosphoguanylyl(3'->5')guanosine (pGpG). In vitro, can use pGpG as an alternative substrate and hydrolyze it into GMP . Acts in regulation of motility, synthesis of virulence determinants and biofilm architecture . May act preferentially as a pGpG binding protein	annotation not available	0.518
DR97_2127	DR97_2126	DR97_2127	DR97_2126	Hypothetical protein; Putative secreted protein	Putative two-component system response regulator; Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic diguanylate (c-di-GMP) to GMP Hydrolyzes c-di-GMP to GMP in a two-step reaction, via the linear intermediate 5'-phosphoguanylyl(3'->5')guanosine (pGpG). In vitro, can use pGpG as an alternative substrate and hydrolyze it into GMP . Acts in regulation of motility, synthesis of virulence determinants and biofilm architecture . May act preferentially as a pGpG binding protein	0.573
DR97_2127	DR97_2129	DR97_2127	DR97_2129	Hypothetical protein; Putative secreted protein	annotation not available	0.500
DR97_2127	YedA	DR97_2127	DR97_2128	Hypothetical protein; Putative secreted protein	annotation not available	0.738
DR97_2129	DR97_2127	DR97_2129	DR97_2127	annotation not available	Hypothetical protein; Putative secreted protein	0.500
DR97_2129	YedA	DR97_2129	DR97_2128	annotation not available	annotation not available	0.756
DR97_4623	DR97_1308	DR97_4623	DR97_1308	annotation not available	topB: DNA topoisomerase III family protein	0.683
DR97_4623	DR97_5572	DR97_4623	DR97_5572	annotation not available	topB: DNA topoisomerase III family protein	0.683
DR97_4623	YedA	DR97_4623	DR97_2128	annotation not available	annotation not available	0.854
DR97_4623	spoOJ	DR97_4623	DR97_2941	annotation not available	Parb family transcriptional regulator, chromosome partitioning protein; parB_part: ParB/RepB/Spo0J family partition domain protein; Belongs to the ParB family	0.485
DR97_5572	DR97_4623	DR97_5572	DR97_4623	topB: DNA topoisomerase III family protein	annotation not available	0.683
DR97_5572	YedA	DR97_5572	DR97_2128	topB: DNA topoisomerase III family protein	annotation not available	0.728
DR97_5572	spoOJ	DR97_5572	DR97_2941	topB: DNA topoisomerase III family protein	Parb family transcriptional regulator, chromosome partitioning protein; parB_part: ParB/RepB/Spo0J family partition domain protein; Belongs to the ParB family	0.766

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