Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AmrB | DR97_2181 | DR97_5829 | DR97_2181 | 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein | annotation not available | 0.846 |
AmrB | marR | DR97_5829 | DR97_2524 | 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein | annotation not available | 0.501 |
AmrB | mexC | DR97_5829 | DR97_1905 | 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein | Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family | 0.994 |
DR97_2180 | DR97_2181 | DR97_2180 | DR97_2181 | Hypothetical protein; Proofreading thioesterase EntH | annotation not available | 0.755 |
DR97_2180 | DR97_2182 | DR97_2180 | DR97_2182 | Hypothetical protein; Proofreading thioesterase EntH | Belongs to the short-chain dehydrogenases/reductases (SDR) family | 0.514 |
DR97_2181 | AmrB | DR97_2181 | DR97_5829 | annotation not available | 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein | 0.846 |
DR97_2181 | DR97_2180 | DR97_2181 | DR97_2180 | annotation not available | Hypothetical protein; Proofreading thioesterase EntH | 0.755 |
DR97_2181 | DR97_2182 | DR97_2181 | DR97_2182 | annotation not available | Belongs to the short-chain dehydrogenases/reductases (SDR) family | 0.754 |
DR97_2181 | DR97_5510 | DR97_2181 | DR97_5510 | annotation not available | soxR: redox-sensitive transcriptional activator SoxR | 0.843 |
DR97_2181 | gyrA | DR97_2181 | DR97_4768 | annotation not available | Dna gyrase, a subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner | 0.694 |
DR97_2181 | marR | DR97_2181 | DR97_2524 | annotation not available | annotation not available | 0.858 |
DR97_2181 | mexC | DR97_2181 | DR97_1905 | annotation not available | Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family | 0.854 |
DR97_2181 | mexR | DR97_2181 | DR97_3392 | annotation not available | Marr family transcriptional regulator, repressor of the mexab-oprm multidrug resistance operon; Repressor of the mexAB-oprM multidrug resistance operon. Also represses its own expression. Many variants lead to increased expression of the mexAB-oprM operon | 0.799 |
DR97_2181 | ramA | DR97_2181 | DR97_4341 | annotation not available | annotation not available | 0.707 |
DR97_2181 | soxR | DR97_2181 | DR97_6160 | annotation not available | Merr family transcriptional regulator, redox-sensitive transcriptional activator soxr; Activates the transcription of the soxS gene which itself controls the superoxide response regulon. SoxR contains a 2Fe-2S iron- sulfur cluster that may act as a redox sensor system that recognizes superoxide. The variable redox state of the Fe-S cluster is employed in vivo to modulate the transcriptional activity of SoxR in response to specific types of oxidative stress (By similarity) | 0.847 |
DR97_2182 | DR97_2180 | DR97_2182 | DR97_2180 | Belongs to the short-chain dehydrogenases/reductases (SDR) family | Hypothetical protein; Proofreading thioesterase EntH | 0.514 |
DR97_2182 | DR97_2181 | DR97_2182 | DR97_2181 | Belongs to the short-chain dehydrogenases/reductases (SDR) family | annotation not available | 0.754 |
DR97_5510 | DR97_2181 | DR97_5510 | DR97_2181 | soxR: redox-sensitive transcriptional activator SoxR | annotation not available | 0.843 |
DR97_5510 | marR | DR97_5510 | DR97_2524 | soxR: redox-sensitive transcriptional activator SoxR | annotation not available | 0.873 |
gyrA | DR97_2181 | DR97_4768 | DR97_2181 | Dna gyrase, a subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner | annotation not available | 0.694 |
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