STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_221Type VI secretion protein, family (443 aa)    
Predicted Functional Partners:
DR97_220
Uncharacterized protein; IV_VI_DotU: type IV/VI secretion system , DotU family domain protein
 
  
 0.987
DR97_223
annotation not available
 
  
 0.987
DR97_222
annotation not available
 
  
 0.985
DR97_219
annotation not available
 
  
 0.983
clpV1-2
VI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family
 
  
 0.957
DR97_228
Uncharacterized protein
 
  
 0.955
DR97_227
Uncharacterized protein
 
  
 0.951
pstP
annotation not available
 
  
 0.938
DR97_224
Uncharacterized protein
 
    0.928
pknA
annotation not available
 
     0.920
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
Server load: low (12%) [HD]