STRINGSTRING
opdK protein (Pseudomonas aeruginosa) - STRING interaction network
"opdK" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opdKannotation not available (417 aa)    
Predicted Functional Partners:
benE
benE- benzoate transporter family protein (398 aa)
   
     
  0.882
benK
annotation not available (446 aa)
         
  0.859
DR97_4651
annotation not available (440 aa)
           
  0.853
oprO
annotation not available (438 aa)
           
  0.840
oprB3
annotation not available (435 aa)
   
     
  0.733
oprB1
annotation not available (454 aa)
   
     
  0.733
DR97_4927
annotation not available (172 aa)
   
          0.624
DR97_5086
Uncharacterized protein (92 aa)
   
          0.602
crfX
annotation not available (82 aa)
   
          0.582
skp
annotation not available (168 aa)
   
 
 
  0.578
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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