orn protein (Pseudomonas aeruginosa) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

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protein homology

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[Homology]

Score

orn

Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides (180 aa)

Predicted Functional Partners:

cysQ

0.904

DR97_4623

0.832

rsgA

0.727

rne

0.716

rnc

0.693

recJ

0.692

DR97_3317

0.622

dnaQ

0.611

hrpA

0.610

rppH

0.605

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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... protein annotations:

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_3317	cysQ	DR97_3317	DR97_2543	Phosphoesterase; yfcE- phosphodiesterase, MJ0936 family protein	bisphos_cysQ- 3’(2’),5’-bisphosphate nucleotidase	0.406
DR97_3317	orn	DR97_3317	DR97_2304	Phosphoesterase; yfcE- phosphodiesterase, MJ0936 family protein	Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides	0.622
DR97_3317	recJ	DR97_3317	DR97_4153	Phosphoesterase; yfcE- phosphodiesterase, MJ0936 family protein	recJ- single-stranded-DNA-specific exonuclease RecJ	0.677
DR97_4623	orn	DR97_4623	DR97_2304	annotation not available	Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides	0.832
cysQ	DR97_3317	DR97_2543	DR97_3317	bisphos_cysQ- 3’(2’),5’-bisphosphate nucleotidase	Phosphoesterase; yfcE- phosphodiesterase, MJ0936 family protein	0.406
cysQ	orn	DR97_2543	DR97_2304	bisphos_cysQ- 3’(2’),5’-bisphosphate nucleotidase	Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides	0.904
cysQ	recJ	DR97_2543	DR97_4153	bisphos_cysQ- 3’(2’),5’-bisphosphate nucleotidase	recJ- single-stranded-DNA-specific exonuclease RecJ	0.754
dnaQ	hrpA	DR97_63	DR97_4633	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3’-5’ exonuclease	DEAH_box_HrpA- ATP-dependent helicase HrpA	0.469
dnaQ	orn	DR97_63	DR97_2304	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3’-5’ exonuclease	Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides	0.611
dnaQ	recJ	DR97_63	DR97_4153	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3’-5’ exonuclease	recJ- single-stranded-DNA-specific exonuclease RecJ	0.596
dnaQ	rppH	DR97_63	DR97_3302	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3’-5’ exonuclease	RNA pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5’-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage	0.564
hrpA	dnaQ	DR97_4633	DR97_63	DEAH_box_HrpA- ATP-dependent helicase HrpA	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3’-5’ exonuclease	0.469
hrpA	orn	DR97_4633	DR97_2304	DEAH_box_HrpA- ATP-dependent helicase HrpA	Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides	0.610
orn	DR97_3317	DR97_2304	DR97_3317	Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides	Phosphoesterase; yfcE- phosphodiesterase, MJ0936 family protein	0.622
orn	DR97_4623	DR97_2304	DR97_4623	Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides	annotation not available	0.832
orn	cysQ	DR97_2304	DR97_2543	Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides	bisphos_cysQ- 3’(2’),5’-bisphosphate nucleotidase	0.904
orn	dnaQ	DR97_2304	DR97_63	Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3’-5’ exonuclease	0.611
orn	hrpA	DR97_2304	DR97_4633	Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides	DEAH_box_HrpA- ATP-dependent helicase HrpA	0.610
orn	recJ	DR97_2304	DR97_4153	Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides	recJ- single-stranded-DNA-specific exonuclease RecJ	0.692
orn	rnc	DR97_2304	DR97_1213	Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides	Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism	0.693

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