STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_231Type vi secretion system protein impb; Uncharacterized protein (168 aa)    
Predicted Functional Partners:
DR97_230
Type vi secretion system protein impc; Type VI secretion protein, EvpB/ family
 
 
 0.989
DR97_229
annotation not available
 
  
 0.980
DR97_232
Type vi secretion system protein vasj; impA-related N-terminal family protein
 
  
 0.975
DR97_227
Type vi secretion system protein imph; Uncharacterized protein
 
  
 0.938
DR97_228
Type vi secretion system protein impg; Uncharacterized protein
 
  
 0.915
DR97_220
Uncharacterized protein; IV_VI_DotU: type IV/VI secretion system , DotU family domain protein
 
  
 0.901
DR97_223
annotation not available
 
  
 0.890
DR97_222
annotation not available
 
  
 0.889
DR97_221
Type vi secretion system protein impj; Type VI secretion protein, family
 
  
 0.878
DR97_219
annotation not available
 
  
 0.867
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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