STRINGSTRING
fimX protein (Pseudomonas aeruginosa) - STRING interaction network
"fimX" - GGDEF: diguanylate cyclase domain protein in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimXGGDEF- diguanylate cyclase domain protein (691 aa)    
Predicted Functional Partners:
pilZ
annotation not available (118 aa)
   
 
  0.978
chpA
annotation not available (2472 aa)
 
 
  0.969
DR97_5719
annotation not available (285 aa)
 
 
  0.946
DR97_4949
Phosphodiesterase (102 aa)
   
     
  0.925
wspE
annotation not available (769 aa)
   
 
  0.921
pleD_6
Response regulator PleD; GGDEF- diguanylate cyclase domain protein (275 aa)
 
 
  0.918
wspR
Two-component response regulator; GGDEF- diguanylate cyclase domain protein (347 aa)
 
 
  0.911
pelD
annotation not available (455 aa)
     
 
  0.903
gacS
annotation not available (925 aa)
 
 
  0.902
DR97_3759
annotation not available (1417 aa)
 
 
  0.893
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
Server load: low (12%) [HD]