Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_2333 | DR97_2336 | DR97_2333 | DR97_2336 | 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase; Belongs to the enoyl-CoA hydratase/isomerase family | annotation not available | 0.450 |
DR97_2333 | RocE | DR97_2333 | DR97_2334 | 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase; Belongs to the enoyl-CoA hydratase/isomerase family | annotation not available | 0.451 |
DR97_2333 | aruS | DR97_2333 | DR97_2335 | 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase; Belongs to the enoyl-CoA hydratase/isomerase family | Putative two-component sensor; Member of the two-component regulatory system AruS/AruR, which is involved in the regulation of the arginine transaminase (ATA) pathway in response to exogeneous L-arginine. Probably functions as a sensor kinase that phosphorylates AruR | 0.758 |
DR97_2336 | DR97_2333 | DR97_2336 | DR97_2333 | annotation not available | 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase; Belongs to the enoyl-CoA hydratase/isomerase family | 0.450 |
DR97_2336 | RocE | DR97_2336 | DR97_2334 | annotation not available | annotation not available | 0.569 |
DR97_2336 | aruR | DR97_2336 | DR97_2337 | annotation not available | Putative two-component response regulator; Member of the two-component regulatory system AruS/AruR, which is involved in the regulation of the arginine transaminase (ATA) pathway in response to exogeneous L-arginine. Regulates transcription of aruH and aruI | 0.935 |
DR97_2336 | aruS | DR97_2336 | DR97_2335 | annotation not available | Putative two-component sensor; Member of the two-component regulatory system AruS/AruR, which is involved in the regulation of the arginine transaminase (ATA) pathway in response to exogeneous L-arginine. Probably functions as a sensor kinase that phosphorylates AruR | 0.937 |
FliL | RocE | DR97_581 | DR97_2334 | Flagellar basal body-associated flil family protein; Controls the rotational direction of flagella during chemotaxis | annotation not available | 0.573 |
RocE | DR97_2333 | DR97_2334 | DR97_2333 | annotation not available | 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase; Belongs to the enoyl-CoA hydratase/isomerase family | 0.451 |
RocE | DR97_2336 | DR97_2334 | DR97_2336 | annotation not available | annotation not available | 0.569 |
RocE | FliL | DR97_2334 | DR97_581 | annotation not available | Flagellar basal body-associated flil family protein; Controls the rotational direction of flagella during chemotaxis | 0.573 |
RocE | aruR | DR97_2334 | DR97_2337 | annotation not available | Putative two-component response regulator; Member of the two-component regulatory system AruS/AruR, which is involved in the regulation of the arginine transaminase (ATA) pathway in response to exogeneous L-arginine. Regulates transcription of aruH and aruI | 0.510 |
RocE | aruS | DR97_2334 | DR97_2335 | annotation not available | Putative two-component sensor; Member of the two-component regulatory system AruS/AruR, which is involved in the regulation of the arginine transaminase (ATA) pathway in response to exogeneous L-arginine. Probably functions as a sensor kinase that phosphorylates AruR | 0.481 |
RocE | ihfB | DR97_2334 | DR97_4775 | annotation not available | This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control | 0.673 |
RocE | infA | DR97_2334 | DR97_5343 | annotation not available | Translation initiation factor if-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex | 0.684 |
RocE | kefB | DR97_2334 | DR97_727 | annotation not available | Transporter, monovalent cation:proton antiporter-2 family protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family | 0.856 |
RocE | metH | DR97_2334 | DR97_34 | annotation not available | 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate (By similarity) | 0.506 |
RocE | metR | DR97_2334 | DR97_4352 | annotation not available | Lysr family transcriptional regulator, regulator for mete and meth; Belongs to the LysR transcriptional regulatory family | 0.463 |
aruR | DR97_2336 | DR97_2337 | DR97_2336 | Putative two-component response regulator; Member of the two-component regulatory system AruS/AruR, which is involved in the regulation of the arginine transaminase (ATA) pathway in response to exogeneous L-arginine. Regulates transcription of aruH and aruI | annotation not available | 0.935 |
aruR | RocE | DR97_2337 | DR97_2334 | Putative two-component response regulator; Member of the two-component regulatory system AruS/AruR, which is involved in the regulation of the arginine transaminase (ATA) pathway in response to exogeneous L-arginine. Regulates transcription of aruH and aruI | annotation not available | 0.510 |
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