• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
rfaP protein (Pseudomonas aeruginosa) - STRING interaction network
"rfaP" - Lipopolysaccharide core heptose(I) kinase in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaPLipopolysaccharide core heptose(I) kinase; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core (268 aa)    
Predicted Functional Partners:
rfaG
annotation not available (373 aa)
  0.999
rfaC
heptsyl_trn_I- lipopolysaccharide heptosyltransferase I (355 aa)
 
  0.999
rfaF
ADP-heptose-LPS heptosyltransferase homolog; heptsyl_trn_II- lipopolysaccharide heptosyltransferase II (345 aa)
 
  0.998
wapQ
annotation not available (252 aa)
 
   
  0.997
DR97_2361
annotation not available (492 aa)
 
        0.972
wapP
annotation not available (244 aa)
 
   
0.958
waaL
annotation not available (401 aa)
 
     
  0.876
waaA
annotation not available (425 aa)
   
 
  0.874
DR97_2359
annotation not available (378 aa)
 
      0.824
inaA
annotation not available (234 aa)
 
 
  0.811
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
Server load: low (19%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >