STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phaFPolyhydroxyalkanoate synthesis protein PhaF; PHA_granule_1: poly(hydroxyalkanoate) granule-associated domain protein (313 aa)    
Predicted Functional Partners:
PhaI
PHA_granule_1: poly(hydroxyalkanoate) granule-associated domain protein
 
    
0.899
bdhA
Belongs to the short-chain dehydrogenases/reductases (SDR) family
   
  
 0.856
DR97_6035
Pyoverdine biosynthesis protein PvdE; Cyc_pep_trnsptr: cyclic peptide transporter family protein
      
 0.847
DR97_2417
annotation not available
 
     0.828
xpt
Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
     
 0.696
PhaD
annotation not available
  
     0.695
DR97_2880
annotation not available
  
     0.690
DR97_1716
Uncharacterized protein
  
     0.683
DR97_6048
annotation not available
  
     0.641
algE
Has non-porin-like, channel-forming properties and probably functions as an alginate permeability pore
  
     0.640
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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