STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
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[Homology]
Score
selUTrna 2-selenouridine synthase; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain (369 aa)    
Predicted Functional Partners:
selD
Selenophosphate synthetase; Synthesizes selenophosphate from selenide and ATP
  
 0.999
selB
selB: selenocysteine-specific translation elongation factor
 
  
 0.922
DR97_248
Hypothetical protein; Uncharacterized protein
       0.728
selA
L-seryl-trna(ser) seleniumtransferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis
 
  
 0.533
DR97_4614
Uncharacterized protein; 3A0109s03R: phosphate/phosphite/phosphonate ABC transporters, periplasmic binding family protein
 
     0.518
YliJ
Glutathione s-transferase; Belongs to the GST superfamily
      
 0.518
DR97_5957
Putative glutathione s-transferase; Glutathione S-transferase, N-terminal domain protein
      
 0.499
DR97_266
Gsh-dependent disulfide-bond oxidoreductase; Belongs to the GST superfamily
      
 0.498
DR97_911
Gsh-dependent disulfide-bond oxidoreductase; Belongs to the GST superfamily
      
 0.498
YfcG
Gsh-dependent disulfide-bond oxidoreductase; Belongs to the GST superfamily
      
 0.490
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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