Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_3569 | DR97_3759 | DR97_3569 | DR97_3759 | annotation not available | annotation not available | 0.898 |
DR97_3569 | amt | DR97_3569 | DR97_2658 | annotation not available | Amt: ammonium transporter family protein | 0.552 |
DR97_3569 | bvgS | DR97_3569 | DR97_3920 | annotation not available | annotation not available | 0.954 |
DR97_3569 | gacS | DR97_3569 | DR97_1011 | annotation not available | annotation not available | 0.963 |
DR97_3569 | glnA | DR97_3569 | DR97_2473 | annotation not available | Glutamine synthetase, type i; Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia | 0.403 |
DR97_3569 | glnK | DR97_3569 | DR97_2659 | annotation not available | Nitrogen regulatory p-ii family protein; Belongs to the P(II) protein family | 0.783 |
DR97_3569 | narL | DR97_3569 | DR97_3990 | annotation not available | annotation not available | 0.733 |
DR97_3569 | ntrC | DR97_3569 | DR97_2479 | annotation not available | Two-component system, ntrc family, nitrogen regulation response regulator glng; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes | 0.816 |
DR97_3569 | rpoN | DR97_3569 | DR97_1641 | annotation not available | Rna polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released | 0.577 |
DR97_3759 | DR97_3569 | DR97_3759 | DR97_3569 | annotation not available | annotation not available | 0.898 |
DR97_3759 | bvgS | DR97_3759 | DR97_3920 | annotation not available | annotation not available | 0.914 |
DR97_3759 | gacS | DR97_3759 | DR97_1011 | annotation not available | annotation not available | 0.991 |
DR97_3759 | narL | DR97_3759 | DR97_3990 | annotation not available | annotation not available | 0.802 |
DR97_3759 | ntrB | DR97_3759 | DR97_2478 | annotation not available | annotation not available | 0.543 |
DR97_3759 | ntrC | DR97_3759 | DR97_2479 | annotation not available | Two-component system, ntrc family, nitrogen regulation response regulator glng; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes | 0.854 |
DR97_3759 | rpoN | DR97_3759 | DR97_1641 | annotation not available | Rna polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released | 0.722 |
amt | DR97_3569 | DR97_2658 | DR97_3569 | Amt: ammonium transporter family protein | annotation not available | 0.552 |
amt | glnA | DR97_2658 | DR97_2473 | Amt: ammonium transporter family protein | Glutamine synthetase, type i; Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia | 0.867 |
amt | glnK | DR97_2658 | DR97_2659 | Amt: ammonium transporter family protein | Nitrogen regulatory p-ii family protein; Belongs to the P(II) protein family | 0.999 |
amt | ntrB | DR97_2658 | DR97_2478 | Amt: ammonium transporter family protein | annotation not available | 0.836 |
page 1 of 4