STRINGSTRING
ctpA protein (Pseudomonas aeruginosa) - STRING interaction network
"ctpA" - Carboxy-terminal-processing protease in Pseudomonas aeruginosa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctpACarboxy-terminal-processing protease; Prc- C-terminal processing peptidase family protein; Belongs to the peptidase S41A family (436 aa)    
Predicted Functional Partners:
DR97_2489
annotation not available (257 aa)
   
        0.874
DR97_2487
annotation not available (428 aa)
 
        0.836
rppH
RNA pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5’-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage (159 aa)
       
  0.773
DR97_2490
Uncharacterized protein (493 aa)
   
        0.687
mrcA
PBP_1a_fam- penicillin-binding , 1A family protein (823 aa)
 
     
  0.541
mucD
Periplasmic serine endoprotease DegP-like; degP_htrA_DO- peptidase Do family protein; Belongs to the peptidase S1C family (474 aa)
 
 
  0.532
fixI
ATPase-IB1_Cu- copper-translocating P-type ATPase (811 aa)
         
  0.493
DR97_2486
annotation not available (272 aa)
   
        0.482
DR97_3620
annotation not available (479 aa)
 
 
 
  0.469
ctaA
annotation not available (357 aa)
           
  0.456
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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