ydgJ protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ydgJ

annotation not available (360 aa)

Predicted Functional Partners:

DR97_2504

0.753

mutY

0.651

gltB

0.626

DR97_2502

0.624

DR97_2501

0.503

hldE

0.490

DR97_3199

0.455

DR97_2500

0.443

metN2

0.421

pslA

0.416

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_2500	DR97_2501	DR97_2500	DR97_2501	Uncharacterized protein	annotation not available	0.845
DR97_2500	DR97_2502	DR97_2500	DR97_2502	Uncharacterized protein	annotation not available	0.583
DR97_2500	DR97_2504	DR97_2500	DR97_2504	Uncharacterized protein	Probable Fe(2+)-trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes	0.489
DR97_2500	mutY	DR97_2500	DR97_2503	Uncharacterized protein	mutY- A/G-specific adenine glycosylase	0.583
DR97_2500	ydgJ	DR97_2500	DR97_2505	Uncharacterized protein	annotation not available	0.443
DR97_2501	DR97_2500	DR97_2501	DR97_2500	annotation not available	Uncharacterized protein	0.845
DR97_2501	DR97_2502	DR97_2501	DR97_2502	annotation not available	annotation not available	0.596
DR97_2501	DR97_2504	DR97_2501	DR97_2504	annotation not available	Probable Fe(2+)-trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes	0.507
DR97_2501	mutY	DR97_2501	DR97_2503	annotation not available	mutY- A/G-specific adenine glycosylase	0.628
DR97_2501	ydgJ	DR97_2501	DR97_2505	annotation not available	annotation not available	0.503
DR97_2502	DR97_2500	DR97_2502	DR97_2500	annotation not available	Uncharacterized protein	0.583
DR97_2502	DR97_2501	DR97_2502	DR97_2501	annotation not available	annotation not available	0.596
DR97_2502	DR97_2504	DR97_2502	DR97_2504	annotation not available	Probable Fe(2+)-trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes	0.839
DR97_2502	mutY	DR97_2502	DR97_2503	annotation not available	mutY- A/G-specific adenine glycosylase	0.920
DR97_2502	ydgJ	DR97_2502	DR97_2505	annotation not available	annotation not available	0.624
DR97_2504	DR97_2500	DR97_2504	DR97_2500	Probable Fe(2+)-trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes	Uncharacterized protein	0.489
DR97_2504	DR97_2501	DR97_2504	DR97_2501	Probable Fe(2+)-trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes	annotation not available	0.507
DR97_2504	DR97_2502	DR97_2504	DR97_2502	Probable Fe(2+)-trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes	annotation not available	0.839
DR97_2504	mutY	DR97_2504	DR97_2503	Probable Fe(2+)-trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes	mutY- A/G-specific adenine glycosylase	0.947
DR97_2504	ydgJ	DR97_2504	DR97_2505	Probable Fe(2+)-trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes	annotation not available	0.753

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About