STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FixRannotation not available (245 aa)    
Predicted Functional Partners:
pvdL
Uncharacterized protein; D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
  
 0.651
cc4
Cytochrome c4 precursor; Diheme, high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems
      
 0.571
hasD
Atp-binding cassette, subfamily c, bacterial exporter for protease/lipase; Alkaline protease secretion ATP-binding protein AprD; type_I_sec_PrtD: type I secretion system ATPase family protein
  
    0.566
DR97_2518
Hypothetical protein; Uncharacterized protein
       0.563
pvdG
annotation not available
   
  
 0.561
DR97_6021
annotation not available
   
  
 0.556
pvdH
2,4-diaminobutyrate 4-transaminase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
   
 
 0.548
DR97_6022
annotation not available
   
  
 0.542
DR97_2136
annotation not available
   
    0.529
toxR
Exotoxin a regulatory protein; Positive regulation of toxA gene transcription
   
    0.528
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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