STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_2522Octopine transport system permease protein occM; HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein (230 aa)    
Predicted Functional Partners:
DR97_2520
Putative lysine/arginine/ornithine/histidine/octopine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family
 
 0.995
DR97_2521
HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein
 
0.995
DR97_2519
annotation not available
 
 0.986
DR97_4001
Arginine/ornithine transport system substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein
  
 0.893
DR97_2429
annotation not available
 0.883
GlnQ
annotation not available
 0.878
aotJ
Arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family
  
 0.875
GltL
annotation not available
 0.875
hisJ
annotation not available
  
 0.840
FliY
Bacterial extracellular solute-binding s, 3 family protein; Belongs to the bacterial solute-binding protein 3 family
    0.835
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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