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ygiK protein (Pseudomonas aeruginosa) - STRING interaction network
"ygiK" - Sialic acid TRAP transporter permease protein SiaT in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygiKSialic acid TRAP transporter permease protein SiaT; dctM- TRAP transporter, DctM subunit (427 aa)    
Predicted Functional Partners:
DR97_2536
annotation not available (210 aa)
 
   
  0.986
dctP1
C4-dicarboxylate-binding periplasmic protein; dctP- TRAP transporter solute receptor, DctP family protein (331 aa)
   
  0.975
dctP5
C4-dicarboxylate-binding periplasmic protein; dctP- TRAP transporter solute receptor, DctP family protein (331 aa)
     
  0.830
dctP3
C4-dicarboxylate-binding periplasmic protein; dctP- TRAP transporter solute receptor, DctP family protein (332 aa)
     
  0.809
DR97_4091
annotation not available (346 aa)
     
  0.803
dctM
dctM- TRAP transporter, DctM subunit (427 aa)
   
   
 
0.801
dctQ
annotation not available (212 aa)
 
     
  0.794
DR97_2924
TRAP_TAXI- TRAP transporter solute receptor, TAXI family protein (319 aa)
   
          0.481
DR97_4702
annotation not available (599 aa)
     
        0.451
dctD1
annotation not available (462 aa)
         
  0.441
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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