Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_1986 | NudE | DR97_1986 | DR97_2544 | annotation not available | annotation not available | 0.457 |
DR97_1986 | aspP | DR97_1986 | DR97_2324 | annotation not available | annotation not available | 0.457 |
DR97_1986 | hrpA | DR97_1986 | DR97_4633 | annotation not available | Putative atp-dependent helicase; DEAH_box_HrpA: ATP-dependent helicase HrpA | 0.776 |
DR97_1986 | hrpB | DR97_1986 | DR97_3905 | annotation not available | DEAH_box_HrpB: ATP-dependent helicase HrpB | 0.776 |
DR97_1986 | nnrD | DR97_1986 | DR97_2302 | annotation not available | Adp-dependent nad(p)h-hydrate dehydratase / nad(p)h-hydrate epimerase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hyd [...] | 0.516 |
DR97_1986 | rnc | DR97_1986 | DR97_1213 | annotation not available | Ribonuclease iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism | 0.767 |
DR97_2545 | NudE | DR97_2545 | DR97_2544 | Hydrolase; HAD-SF-IA-v3: HAD hydrolase, IA, variant 3 family protein | annotation not available | 0.755 |
DR97_2545 | cysQ | DR97_2545 | DR97_2543 | Hydrolase; HAD-SF-IA-v3: HAD hydrolase, IA, variant 3 family protein | 3'(2'), 5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP | 0.718 |
NudE | DR97_1986 | DR97_2544 | DR97_1986 | annotation not available | annotation not available | 0.457 |
NudE | DR97_2545 | DR97_2544 | DR97_2545 | annotation not available | Hydrolase; HAD-SF-IA-v3: HAD hydrolase, IA, variant 3 family protein | 0.755 |
NudE | algC | DR97_2544 | DR97_2693 | annotation not available | Phosphomannomutase / phosphoglucomutase; Highly reversible phosphoryltransferase. The phosphomannomutase activity produces a precursor for alginate polymerization, the alginate layer causes a mucoid phenotype and provides a protective barrier against host immune defenses and antibiotics. Also involved in core lipopolysaccaride (LPS) biosynthesis due to its phosphoglucomutase activity. Essential for rhamnolipid production, an exoproduct correlated with pathogenicity . Required for biofilm production. The reaction proceeds via 2 processive phosphoryl transferase reactions; first from enz [...] | 0.911 |
NudE | aspP | DR97_2544 | DR97_2324 | annotation not available | annotation not available | 0.802 |
NudE | cysQ | DR97_2544 | DR97_2543 | annotation not available | 3'(2'), 5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP | 0.901 |
NudE | hrpA | DR97_2544 | DR97_4633 | annotation not available | Putative atp-dependent helicase; DEAH_box_HrpA: ATP-dependent helicase HrpA | 0.507 |
NudE | hrpB | DR97_2544 | DR97_3905 | annotation not available | DEAH_box_HrpB: ATP-dependent helicase HrpB | 0.507 |
NudE | nnrD | DR97_2544 | DR97_2302 | annotation not available | Adp-dependent nad(p)h-hydrate dehydratase / nad(p)h-hydrate epimerase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hyd [...] | 0.554 |
NudE | prs | DR97_2544 | DR97_1980 | annotation not available | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P) | 0.905 |
NudE | rnc | DR97_2544 | DR97_1213 | annotation not available | Ribonuclease iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism | 0.643 |
algC | NudE | DR97_2693 | DR97_2544 | Phosphomannomutase / phosphoglucomutase; Highly reversible phosphoryltransferase. The phosphomannomutase activity produces a precursor for alginate polymerization, the alginate layer causes a mucoid phenotype and provides a protective barrier against host immune defenses and antibiotics. Also involved in core lipopolysaccaride (LPS) biosynthesis due to its phosphoglucomutase activity. Essential for rhamnolipid production, an exoproduct correlated with pathogenicity . Required for biofilm production. The reaction proceeds via 2 processive phosphoryl transferase reactions; first from enz [...] | annotation not available | 0.911 |
algC | aspP | DR97_2693 | DR97_2324 | Phosphomannomutase / phosphoglucomutase; Highly reversible phosphoryltransferase. The phosphomannomutase activity produces a precursor for alginate polymerization, the alginate layer causes a mucoid phenotype and provides a protective barrier against host immune defenses and antibiotics. Also involved in core lipopolysaccaride (LPS) biosynthesis due to its phosphoglucomutase activity. Essential for rhamnolipid production, an exoproduct correlated with pathogenicity . Required for biofilm production. The reaction proceeds via 2 processive phosphoryl transferase reactions; first from enz [...] | annotation not available | 0.911 |
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