STRINGSTRING
ygaU protein (Pseudomonas aeruginosa) - STRING interaction network
"ygaU" - LysM domain/BON superfamily protein in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygaULysM domain/BON superfamily protein (145 aa)    
Predicted Functional Partners:
DR97_3294
Tryptophanyl-tRNA synthetase (110 aa)
   
        0.868
rcsF
tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO (231 aa)
            
  0.853
DR97_4896
DUF883 domain-containing protein (109 aa)
      
        0.732
ompR_4
Transcriptional regulatory , C terminal family protein (225 aa)
            
  0.726
wrbA
NAD(P)H-quinone oxidoreductase, type IV; flav_wrbA- NAD(P)H-quinone oxidoreductase, type IV; Belongs to the WrbA family (198 aa)
   
        0.709
dps2
annotation not available (156 aa)
      
        0.704
osmC
osmo_induc_OsmC- peroxiredoxin, OsmC subfamily protein (141 aa)
      
   
  0.673
yqjC
Uncharacterized protein (139 aa)
    
        0.662
yeaG
prkA serine kinase C-terminal domain protein (640 aa)
      
        0.661
DR97_6014
annotation not available (226 aa)
      
        0.630
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
Server load: low (9%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >