STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YgaUHypothetical protein; LysM domain/BON superfamily protein (145 aa)    
Predicted Functional Partners:
DR97_3294
Uncharacterized protein; Belongs to the UPF0339 family. Duplicated subfamily
  
   0.903
DR97_4896
Hypothetical protein; DUF883 domain-containing protein
   
    0.721
wrbA
Nad(p)h dehydrogenase (quinone); Belongs to the WrbA family
  
  
 0.699
PrkA
prkA serine kinase C-terminal domain protein
   
  
 0.689
CpxR
Two-component system, ompr family, response regulator cpxr; Transcriptional regulatory , C terminal family protein
      
 0.689
DR97_975
Starvation-inducible dna-binding protein; Belongs to the Dps family
   
    0.689
osmC
osmo_induc_OsmC: peroxiredoxin, OsmC subfamily protein
   
  
 0.683
YcgB
annotation not available
   
  
 0.671
YqjC
Hypothetical protein; Uncharacterized protein
  
    0.660
dacC
Serine-type d-ala-d-ala carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family
   
 
 0.628
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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