STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YhiHPutative atp-binding/permease fusion abc transporter; ccmA: heme ABC exporter, ATP-binding protein CcmA (909 aa)    
Predicted Functional Partners:
YhiI
Uncharacterized protein; RND_mfp: efflux transporter, RND family, MFP subunit
 
 0.986
yhhJ
annotation not available
 
0.963
rbsC
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family
  
 0.962
rpsI
Small subunit ribosomal protein s9; Belongs to the universal ribosomal protein uS9 family
    
  0.959
rpsR
Small subunit ribosomal protein s18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
    
  0.959
rpsP
Small subunit ribosomal protein s16; Belongs to the bacterial ribosomal protein bS16 family
    
  0.958
DR97_1640
annotation not available
    
 
0.953
DR97_5029
annotation not available
    
 
0.947
GltG
annotation not available
     
 0.928
MtlG
annotation not available
     
 0.928
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.