Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_3569 | DR97_4897 | DR97_3569 | DR97_4897 | annotation not available | annotation not available | 0.552 |
DR97_3569 | amt | DR97_3569 | DR97_2658 | annotation not available | Amt: ammonium transporter family protein | 0.552 |
DR97_3569 | glnA | DR97_3569 | DR97_2473 | annotation not available | Glutamine synthetase, type i; Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia | 0.403 |
DR97_3569 | glnK | DR97_3569 | DR97_2659 | annotation not available | Nitrogen regulatory p-ii family protein; Belongs to the P(II) protein family | 0.783 |
DR97_3569 | gltB | DR97_3569 | DR97_2391 | annotation not available | annotation not available | 0.889 |
DR97_3569 | ntrC | DR97_3569 | DR97_2479 | annotation not available | Two-component system, ntrc family, nitrogen regulation response regulator glng; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes | 0.816 |
DR97_4897 | DR97_3569 | DR97_4897 | DR97_3569 | annotation not available | annotation not available | 0.552 |
DR97_4897 | glnK | DR97_4897 | DR97_2659 | annotation not available | Nitrogen regulatory p-ii family protein; Belongs to the P(II) protein family | 0.979 |
DR97_4897 | gltB | DR97_4897 | DR97_2391 | annotation not available | annotation not available | 0.916 |
DR97_4897 | ntrB | DR97_4897 | DR97_2478 | annotation not available | annotation not available | 0.557 |
amt | DR97_3569 | DR97_2658 | DR97_3569 | Amt: ammonium transporter family protein | annotation not available | 0.552 |
amt | glnA | DR97_2658 | DR97_2473 | Amt: ammonium transporter family protein | Glutamine synthetase, type i; Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia | 0.867 |
amt | glnD | DR97_2658 | DR97_4281 | Amt: ammonium transporter family protein | [protein-pii] uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism | 0.886 |
amt | glnK | DR97_2658 | DR97_2659 | Amt: ammonium transporter family protein | Nitrogen regulatory p-ii family protein; Belongs to the P(II) protein family | 0.999 |
amt | gltB | DR97_2658 | DR97_2391 | Amt: ammonium transporter family protein | annotation not available | 0.930 |
amt | ntrB | DR97_2658 | DR97_2478 | Amt: ammonium transporter family protein | annotation not available | 0.836 |
amt | ntrC | DR97_2658 | DR97_2479 | Amt: ammonium transporter family protein | Two-component system, ntrc family, nitrogen regulation response regulator glng; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes | 0.761 |
argA | argB | DR97_2573 | DR97_2694 | Amino-acid n-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate | 0.991 |
argA | glnK | DR97_2573 | DR97_2659 | Amino-acid n-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily | Nitrogen regulatory p-ii family protein; Belongs to the P(II) protein family | 0.910 |
argA | gltB | DR97_2573 | DR97_2391 | Amino-acid n-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily | annotation not available | 0.879 |
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