Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DR97_2674 | dadA1 | DR97_2674 | DR97_2675 | annotation not available | Ketopantoate reductase pane/apba family protein; Catalyzes the oxidative deamination of D-amino acids. Has very broad substrate specificity; all the D-amino acids tested can be used as the substrate except D-Glu and D-Gln. Participates in the utilization of several D-amino acids as the sole source of nitrogen, i.e. D-alanine, D-histidine, D-phenylalanine, D-serine, D-threonine, and D-valine | 0.926 |
| DR97_2674 | dadX | DR97_2674 | DR97_2673 | annotation not available | Alanine racemase; Isomerizes L-alanine to D-alanine which is then oxidized to pyruvate by DadA | 0.792 |
| DR97_3893 | dadA1 | DR97_3893 | DR97_2675 | Putative acyl-coa dehydrogenase; acyl-CoA dehydrogenase, C-terminal domain protein | Ketopantoate reductase pane/apba family protein; Catalyzes the oxidative deamination of D-amino acids. Has very broad substrate specificity; all the D-amino acids tested can be used as the substrate except D-Glu and D-Gln. Participates in the utilization of several D-amino acids as the sole source of nitrogen, i.e. D-alanine, D-histidine, D-phenylalanine, D-serine, D-threonine, and D-valine | 0.864 |
| DR97_3893 | dadX | DR97_3893 | DR97_2673 | Putative acyl-coa dehydrogenase; acyl-CoA dehydrogenase, C-terminal domain protein | Alanine racemase; Isomerizes L-alanine to D-alanine which is then oxidized to pyruvate by DadA | 0.678 |
| HisC | aspC | DR97_5640 | DR97_4790 | annotation not available | Aminotransferase class i and ii family protein; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family | 0.820 |
| HisC | dadA1 | DR97_5640 | DR97_2675 | annotation not available | Ketopantoate reductase pane/apba family protein; Catalyzes the oxidative deamination of D-amino acids. Has very broad substrate specificity; all the D-amino acids tested can be used as the substrate except D-Glu and D-Gln. Participates in the utilization of several D-amino acids as the sole source of nitrogen, i.e. D-alanine, D-histidine, D-phenylalanine, D-serine, D-threonine, and D-valine | 0.900 |
| HisC | hisC1 | DR97_5640 | DR97_1625 | annotation not available | Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily | 0.818 |
| HisC | hisC2 | DR97_5640 | DR97_4771 | annotation not available | Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily | 0.834 |
| HisC | hppD | DR97_5640 | DR97_1078 | annotation not available | 4-hydroxyphenylpyruvate dioxygenase; Belongs to the 4HPPD family | 0.908 |
| HisC | phhC | DR97_5640 | DR97_1073 | annotation not available | Aminotransferase class i and ii family protein; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family | 0.820 |
| HisC | quiC1 | DR97_5640 | DR97_3199 | annotation not available | Xylose isomerase-like tim barrel family protein; Catalyzes the conversion of 3-dehydroshikimate to protocatechuate (3,4-dihydroxybenzoate), a common intermediate of quinate and shikimate degradation pathways. Is required for growth on either quinate or shikimate as a sole carbon source | 0.916 |
| aspC | HisC | DR97_4790 | DR97_5640 | Aminotransferase class i and ii family protein; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family | annotation not available | 0.820 |
| aspC | dadA1 | DR97_4790 | DR97_2675 | Aminotransferase class i and ii family protein; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family | Ketopantoate reductase pane/apba family protein; Catalyzes the oxidative deamination of D-amino acids. Has very broad substrate specificity; all the D-amino acids tested can be used as the substrate except D-Glu and D-Gln. Participates in the utilization of several D-amino acids as the sole source of nitrogen, i.e. D-alanine, D-histidine, D-phenylalanine, D-serine, D-threonine, and D-valine | 0.908 |
| aspC | hisC1 | DR97_4790 | DR97_1625 | Aminotransferase class i and ii family protein; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family | Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily | 0.840 |
| aspC | hisC2 | DR97_4790 | DR97_4771 | Aminotransferase class i and ii family protein; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family | Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily | 0.841 |
| aspC | hppD | DR97_4790 | DR97_1078 | Aminotransferase class i and ii family protein; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family | 4-hydroxyphenylpyruvate dioxygenase; Belongs to the 4HPPD family | 0.985 |
| aspC | phhC | DR97_4790 | DR97_1073 | Aminotransferase class i and ii family protein; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family | Aminotransferase class i and ii family protein; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family | 0.822 |
| aspC | quiC1 | DR97_4790 | DR97_3199 | Aminotransferase class i and ii family protein; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family | Xylose isomerase-like tim barrel family protein; Catalyzes the conversion of 3-dehydroshikimate to protocatechuate (3,4-dihydroxybenzoate), a common intermediate of quinate and shikimate degradation pathways. Is required for growth on either quinate or shikimate as a sole carbon source | 0.909 |
| dadA1 | DR97_2674 | DR97_2675 | DR97_2674 | Ketopantoate reductase pane/apba family protein; Catalyzes the oxidative deamination of D-amino acids. Has very broad substrate specificity; all the D-amino acids tested can be used as the substrate except D-Glu and D-Gln. Participates in the utilization of several D-amino acids as the sole source of nitrogen, i.e. D-alanine, D-histidine, D-phenylalanine, D-serine, D-threonine, and D-valine | annotation not available | 0.926 |
| dadA1 | DR97_3893 | DR97_2675 | DR97_3893 | Ketopantoate reductase pane/apba family protein; Catalyzes the oxidative deamination of D-amino acids. Has very broad substrate specificity; all the D-amino acids tested can be used as the substrate except D-Glu and D-Gln. Participates in the utilization of several D-amino acids as the sole source of nitrogen, i.e. D-alanine, D-histidine, D-phenylalanine, D-serine, D-threonine, and D-valine | Putative acyl-coa dehydrogenase; acyl-CoA dehydrogenase, C-terminal domain protein | 0.864 |
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