DR97_2747 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DR97_2747

annotation not available (134 aa)

Predicted Functional Partners:

tesA

0.853

DR97_4481

0.747

Ech1

0.628

fadD3

0.568

PACL_0324

0.568

DR97_1416

0.566

fadD1

0.566

tesB

0.565

DR97_1239

0.545

DR97_1240

0.545

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_1239	DR97_1240	DR97_1239	DR97_1240	annotation not available	annotation not available	0.926
DR97_1239	DR97_2747	DR97_1239	DR97_2747	annotation not available	annotation not available	0.545
DR97_1239	PACL_0324	DR97_1239	DR97_6204	annotation not available	annotation not available	0.789
DR97_1239	fadD1	DR97_1239	DR97_4630	annotation not available	annotation not available	0.811
DR97_1239	fadD3	DR97_1239	DR97_4631	annotation not available	annotation not available	0.811
DR97_1240	DR97_1239	DR97_1240	DR97_1239	annotation not available	annotation not available	0.926
DR97_1240	DR97_2747	DR97_1240	DR97_2747	annotation not available	annotation not available	0.545
DR97_1240	PACL_0324	DR97_1240	DR97_6204	annotation not available	annotation not available	0.787
DR97_1240	fadD1	DR97_1240	DR97_4630	annotation not available	annotation not available	0.797
DR97_1240	fadD3	DR97_1240	DR97_4631	annotation not available	annotation not available	0.797
DR97_1416	DR97_2747	DR97_1416	DR97_2747	annotation not available	annotation not available	0.566
DR97_1416	tesA	DR97_1416	DR97_5085	annotation not available	annotation not available	0.467
DR97_2747	DR97_1239	DR97_2747	DR97_1239	annotation not available	annotation not available	0.545
DR97_2747	DR97_1240	DR97_2747	DR97_1240	annotation not available	annotation not available	0.545
DR97_2747	DR97_1416	DR97_2747	DR97_1416	annotation not available	annotation not available	0.566
DR97_2747	DR97_4481	DR97_2747	DR97_4481	annotation not available	annotation not available	0.747
DR97_2747	Ech1	DR97_2747	DR97_58	annotation not available	annotation not available	0.628
DR97_2747	PACL_0324	DR97_2747	DR97_6204	annotation not available	annotation not available	0.568
DR97_2747	fadD1	DR97_2747	DR97_4630	annotation not available	annotation not available	0.566
DR97_2747	fadD3	DR97_2747	DR97_4631	annotation not available	annotation not available	0.568

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About