STRINGSTRING
gbdR protein (Pseudomonas aeruginosa) - STRING interaction network
"gbdR" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gbdRannotation not available (367 aa)    
Predicted Functional Partners:
hcr
annotation not available (366 aa)
 
     
  0.960
gbcA
annotation not available (429 aa)
 
   
  0.959
betI
HTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes (197 aa)
   
     
  0.930
kce
3-keto-5-aminohexanoate cleavage enzyme (294 aa)
 
     
  0.887
pchP
annotation not available (349 aa)
   
     
  0.874
plcH
PC_PLC- phospholipase C, phosphocholine-specific (730 aa)
           
  0.853
sdaA1
Sda_mono- L-serine ammonia-lyase (458 aa)
 
     
  0.795
DR97_2772
annotation not available (325 aa)
 
          0.782
soxG
soxG- sarcosine oxidase, gamma subunit (211 aa)
 
        0.765
soxA
soxA- sarcosine oxidase, alpha subunit; Belongs to the GcvT family (1005 aa)
 
     
  0.763
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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