DR97_2805 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

DR97_2805

annotation not available (302 aa)

Predicted Functional Partners:

DR97_1583

0.672

aspA

0.601

DR97_5293

0.527

mvaT

0.527

DR97_1948

0.496

gltC_1

0.481

DR97_5095

0.467

cysL_5

0.467

gltR_2

0.454

yeiE1

0.447

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_1583	DR97_1948	DR97_1583	DR97_1948	RNA-binding protein	Putative lipoprotein	0.764
DR97_1583	DR97_2805	DR97_1583	DR97_2805	RNA-binding protein	annotation not available	0.672
DR97_1583	DR97_5293	DR97_1583	DR97_5293	RNA-binding protein	annotation not available	0.690
DR97_1583	mvaT	DR97_1583	DR97_1491	RNA-binding protein	annotation not available	0.727
DR97_1948	DR97_1583	DR97_1948	DR97_1583	Putative lipoprotein	RNA-binding protein	0.764
DR97_1948	DR97_2805	DR97_1948	DR97_2805	Putative lipoprotein	annotation not available	0.496
DR97_1948	DR97_5293	DR97_1948	DR97_5293	Putative lipoprotein	annotation not available	0.595
DR97_1948	mvaT	DR97_1948	DR97_1491	Putative lipoprotein	annotation not available	0.685
DR97_2805	DR97_1583	DR97_2805	DR97_1583	annotation not available	RNA-binding protein	0.672
DR97_2805	DR97_1948	DR97_2805	DR97_1948	annotation not available	Putative lipoprotein	0.496
DR97_2805	DR97_5095	DR97_2805	DR97_5095	annotation not available	annotation not available	0.467
DR97_2805	DR97_5293	DR97_2805	DR97_5293	annotation not available	annotation not available	0.527
DR97_2805	aspA	DR97_2805	DR97_2806	annotation not available	aspA- aspartate ammonia-lyase	0.601
DR97_2805	cysL_5	DR97_2805	DR97_3090	annotation not available	annotation not available	0.467
DR97_2805	gltC_1	DR97_2805	DR97_1066	annotation not available	annotation not available	0.481
DR97_2805	gltR_2	DR97_2805	DR97_789	annotation not available	annotation not available	0.454
DR97_2805	mvaT	DR97_2805	DR97_1491	annotation not available	annotation not available	0.527
DR97_2805	yeiE1	DR97_2805	DR97_4524	annotation not available	annotation not available	0.447
DR97_5095	DR97_2805	DR97_5095	DR97_2805	annotation not available	annotation not available	0.467
DR97_5293	DR97_1583	DR97_5293	DR97_1583	annotation not available	RNA-binding protein	0.690

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