DR97_286 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

DR97_286

annotation not available (140 aa)

Predicted Functional Partners:

DR97_285

0.768

DR97_283

0.577

DR97_288

0.570

DR97_284

0.532

DR97_287

0.497

ctaG

0.482

mdcD

0.480

madM

0.479

DR97_1917

0.470

ctaD

0.465

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_1917	DR97_283	DR97_1917	DR97_283	GTP-binding protein	Helicase	0.470
DR97_1917	DR97_285	DR97_1917	DR97_285	GTP-binding protein	annotation not available	0.525
DR97_1917	DR97_286	DR97_1917	DR97_286	GTP-binding protein	annotation not available	0.470
DR97_1917	ctaD	DR97_1917	DR97_3063	GTP-binding protein	Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B	0.583
DR97_1917	ctaG	DR97_1917	DR97_3064	GTP-binding protein	annotation not available	0.568
DR97_1917	madM	DR97_1917	DR97_3173	GTP-binding protein	malonate_madM- malonate transporter, MadM subunit	0.549
DR97_1917	mdcD	DR97_1917	DR97_3168	GTP-binding protein	Malonate_beta- malonate decarboxylase, beta subunit	0.539
DR97_283	DR97_1917	DR97_283	DR97_1917	Helicase	GTP-binding protein	0.470
DR97_283	DR97_284	DR97_283	DR97_284	Helicase	annotation not available	0.807
DR97_283	DR97_285	DR97_283	DR97_285	Helicase	annotation not available	0.533
DR97_283	DR97_286	DR97_283	DR97_286	Helicase	annotation not available	0.577
DR97_283	ctaD	DR97_283	DR97_3063	Helicase	Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B	0.452
DR97_283	ctaG	DR97_283	DR97_3064	Helicase	annotation not available	0.483
DR97_283	madM	DR97_283	DR97_3173	Helicase	malonate_madM- malonate transporter, MadM subunit	0.422
DR97_284	DR97_283	DR97_284	DR97_283	annotation not available	Helicase	0.807
DR97_284	DR97_285	DR97_284	DR97_285	annotation not available	annotation not available	0.620
DR97_284	DR97_286	DR97_284	DR97_286	annotation not available	annotation not available	0.532
DR97_285	DR97_1917	DR97_285	DR97_1917	annotation not available	GTP-binding protein	0.525
DR97_285	DR97_283	DR97_285	DR97_283	annotation not available	Helicase	0.533
DR97_285	DR97_284	DR97_285	DR97_284	annotation not available	annotation not available	0.620

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