STRINGSTRING
algB protein (Pseudomonas aeruginosa) - STRING interaction network
"algB" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
algBannotation not available (449 aa)    
Predicted Functional Partners:
kinB
Alginate biosynthesis sensor protein KinB; Member of the two-component regulatory system AlgB/KinB involved in regulation of alginate biosynthesis genes. KinB functions as a membrane-associated protein kinase that phosphorylates AlgB, probably in response to environmental signals (595 aa)
 
 
  0.997
algD
annotation not available (436 aa)
           
  0.908
mucD
Periplasmic serine endoprotease DegP-like; degP_htrA_DO- peptidase Do family protein; Belongs to the peptidase S1C family (474 aa)
   
     
  0.892
algW
annotation not available (389 aa)
   
     
  0.878
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (497 aa)
 
     
  0.876
algU
rpoE_Sigma70- RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily (193 aa)
   
     
  0.874
amrZ
annotation not available (108 aa)
           
  0.854
mucA
Sigma factor AlgU negative regulatory protein; Anti sigma-E RseA, N-terminal domain protein (194 aa)
           
  0.853
mucB
annotation not available (316 aa)
           
  0.853
algP
annotation not available (356 aa)
           
  0.785
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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