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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scyAannotation not available (97 aa)    
Predicted Functional Partners:
cc4
Cytochrome c4 precursor; Diheme, high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems
 
  
 0.984
nirM
Cytochrome c-551 precursor; Electron donor for cytochrome cd1 in nitrite and nitrate respiration
      
 0.853
pvcD
annotation not available
 
   
 0.819
cycB
annotation not available
 
    
0.751
nqrC
Na+-transporting nadh:ubiquinone oxidoreductase subunit c; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
      
 0.705
DR97_2629
annotation not available
  
   
 0.627
ysxC
Ribosome biogenesis gtp-binding protein ysxc; Necessary for normal cell division and for the maintenance of normal septation
       0.584
DR97_1607
annotation not available
  
   
 0.579
nirJ
rSAM_NirJ: heme d1 biosynthesis radical SAM protein NirJ
      
 0.579
nirF
Lactonase, 7-bladed beta-propeller family protein; Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17
   
  
 0.578
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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