mcbR protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mcbR

annotation not available (226 aa)

Predicted Functional Partners:

DR97_2903

0.735

DR97_5151

0.700

lldR_3

0.650

DR97_2902

0.647

cspD

0.630

glcC

0.531

puuA_3

0.458

ydfH_1

0.455

tsaC1

0.436

DR97_2426

0.434

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_2426	mcbR	DR97_2426	DR97_2904	Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit	annotation not available	0.434
DR97_2902	DR97_2903	DR97_2902	DR97_2903	annotation not available	annotation not available	0.752
DR97_2902	mcbR	DR97_2902	DR97_2904	annotation not available	annotation not available	0.647
DR97_2902	puuA_3	DR97_2902	DR97_2901	annotation not available	annotation not available	0.931
DR97_2902	tsaC1	DR97_2902	DR97_2900	annotation not available	annotation not available	0.654
DR97_2903	DR97_2902	DR97_2903	DR97_2902	annotation not available	annotation not available	0.752
DR97_2903	mcbR	DR97_2903	DR97_2904	annotation not available	annotation not available	0.735
DR97_2903	puuA_3	DR97_2903	DR97_2901	annotation not available	annotation not available	0.615
DR97_2903	tsaC1	DR97_2903	DR97_2900	annotation not available	annotation not available	0.557
DR97_5151	lldR_3	DR97_5151	DR97_3077	annotation not available	annotation not available	0.570
DR97_5151	mcbR	DR97_5151	DR97_2904	annotation not available	annotation not available	0.700
DR97_5151	ydfH_1	DR97_5151	DR97_502	annotation not available	annotation not available	0.431
cspD	mcbR	DR97_5340	DR97_2904	cspD- cold shock domain protein CspD	annotation not available	0.630
glcC	mcbR	DR97_2727	DR97_2904	annotation not available	annotation not available	0.531
lldR_3	DR97_5151	DR97_3077	DR97_5151	annotation not available	annotation not available	0.570
lldR_3	mcbR	DR97_3077	DR97_2904	annotation not available	annotation not available	0.650
lldR_3	ydfH_1	DR97_3077	DR97_502	annotation not available	annotation not available	0.434
mcbR	DR97_2426	DR97_2904	DR97_2426	annotation not available	Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit	0.434
mcbR	DR97_2902	DR97_2904	DR97_2902	annotation not available	annotation not available	0.647
mcbR	DR97_2903	DR97_2904	DR97_2903	annotation not available	annotation not available	0.735

page 1 of 2

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About