Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DR97_2913 | DR97_2914 | DR97_2913 | DR97_2914 | Hypothetical protein; Uncharacterized protein | annotation not available | 0.992 |
| DR97_2913 | DR97_2915 | DR97_2913 | DR97_2915 | Hypothetical protein; Uncharacterized protein | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression | 0.964 |
| DR97_2913 | DR97_2917 | DR97_2913 | DR97_2917 | Hypothetical protein; Uncharacterized protein | annotation not available | 0.767 |
| DR97_2914 | DR97_2913 | DR97_2914 | DR97_2913 | annotation not available | Hypothetical protein; Uncharacterized protein | 0.992 |
| DR97_2914 | DR97_2915 | DR97_2914 | DR97_2915 | annotation not available | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression | 0.961 |
| DR97_2914 | DR97_2917 | DR97_2914 | DR97_2917 | annotation not available | annotation not available | 0.751 |
| DR97_2915 | DR97_2913 | DR97_2915 | DR97_2913 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression | Hypothetical protein; Uncharacterized protein | 0.964 |
| DR97_2915 | DR97_2914 | DR97_2915 | DR97_2914 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression | annotation not available | 0.961 |
| DR97_2915 | DR97_2917 | DR97_2915 | DR97_2917 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression | annotation not available | 0.754 |
| DR97_2915 | DR97_5381 | DR97_2915 | DR97_5381 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression | csrA: carbon storage regulator | 0.714 |
| DR97_2915 | Fis | DR97_2915 | DR97_2204 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression | Fis family transcriptional regulator, factor for inversion stimulation protein; Belongs to the transcriptional regulatory Fis family | 0.704 |
| DR97_2915 | csrA | DR97_2915 | DR97_1038 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression | A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). Probably binds to and is sequestered by non-coding s [...] | 0.712 |
| DR97_2915 | greB | DR97_2915 | DR97_5082 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression | Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length | 0.885 |
| DR97_2915 | relA | DR97_2915 | DR97_1005 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression | Rela/spot family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance | 0.866 |
| DR97_2915 | rpoD | DR97_2915 | DR97_3545 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression | Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth | 0.801 |
| DR97_2915 | rpoZ | DR97_2915 | DR97_2708 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression | Dna-directed rna polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity) | 0.815 |
| DR97_2917 | DR97_2913 | DR97_2917 | DR97_2913 | annotation not available | Hypothetical protein; Uncharacterized protein | 0.767 |
| DR97_2917 | DR97_2914 | DR97_2917 | DR97_2914 | annotation not available | annotation not available | 0.751 |
| DR97_2917 | DR97_2915 | DR97_2917 | DR97_2915 | annotation not available | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression | 0.754 |
| DR97_5381 | DR97_2915 | DR97_5381 | DR97_2915 | csrA: carbon storage regulator | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression | 0.714 |
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