DR97_2987 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

DR97_2987

annotation not available (125 aa)

Predicted Functional Partners:

DR97_2985

0.881

rhtA

0.853

fliY

0.853

betC

0.728

DR97_2983

0.557

DR97_2982

0.552

DR97_5102

0.467

rpoA

0.459

DR97_5550

0.454

DR97_5751

0.435

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_2982	DR97_2983	DR97_2982	DR97_2983	annotation not available	Uncharacterized protein; ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	0.868
DR97_2982	DR97_2985	DR97_2982	DR97_2985	annotation not available	annotation not available	0.576
DR97_2982	DR97_2987	DR97_2982	DR97_2987	annotation not available	annotation not available	0.552
DR97_2982	betC	DR97_2982	DR97_2984	annotation not available	Chol_sulfatase- choline-sulfatase	0.867
DR97_2983	DR97_2982	DR97_2983	DR97_2982	Uncharacterized protein; ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	annotation not available	0.868
DR97_2983	DR97_2985	DR97_2983	DR97_2985	Uncharacterized protein; ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	annotation not available	0.756
DR97_2983	DR97_2987	DR97_2983	DR97_2987	Uncharacterized protein; ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	annotation not available	0.557
DR97_2983	betC	DR97_2983	DR97_2984	Uncharacterized protein; ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	Chol_sulfatase- choline-sulfatase	0.881
DR97_2985	DR97_2982	DR97_2985	DR97_2982	annotation not available	annotation not available	0.576
DR97_2985	DR97_2983	DR97_2985	DR97_2983	annotation not available	Uncharacterized protein; ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	0.756
DR97_2985	DR97_2987	DR97_2985	DR97_2987	annotation not available	annotation not available	0.881
DR97_2985	betC	DR97_2985	DR97_2984	annotation not available	Chol_sulfatase- choline-sulfatase	0.723
DR97_2987	DR97_2982	DR97_2987	DR97_2982	annotation not available	annotation not available	0.552
DR97_2987	DR97_2983	DR97_2987	DR97_2983	annotation not available	Uncharacterized protein; ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	0.557
DR97_2987	DR97_2985	DR97_2987	DR97_2985	annotation not available	annotation not available	0.881
DR97_2987	DR97_5102	DR97_2987	DR97_5102	annotation not available	annotation not available	0.467
DR97_2987	DR97_5550	DR97_2987	DR97_5550	annotation not available	Putative transporter slr0944; Arsenical-resistance protein; acr3- arsenical-resistance protein	0.454
DR97_2987	DR97_5751	DR97_2987	DR97_5751	annotation not available	annotation not available	0.435
DR97_2987	betC	DR97_2987	DR97_2984	annotation not available	Chol_sulfatase- choline-sulfatase	0.728
DR97_2987	fliY	DR97_2987	DR97_3278	annotation not available	annotation not available	0.853

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