Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DR97_5944 | pabB | DR97_5944 | DR97_128 | annotation not available | pabB: aminodeoxychorismate synthase, component I | 0.830 |
| DR97_5944 | phnA | DR97_5944 | DR97_946 | annotation not available | Anthranilate synthase component i; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, a precursor for Pseudomonas quinolone signal (2-heptyl-3-hydroxy-4-quinolone; PQS) production which is required to induce the genes for the biosynthesis of the virulence factor pyocyanine (PCN), a characteristic blue-green phenazine pigment produced by P.aeruginosa. In the first step, the glutamine-binding beta subunit (PhnB) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with [...] | 0.822 |
| DR97_5944 | phzE1 | DR97_5944 | DR97_3697 | annotation not available | annotation not available | 0.999 |
| DR97_5944 | trpA | DR97_5944 | DR97_2989 | annotation not available | Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate | 0.974 |
| DR97_5944 | trpB | DR97_5944 | DR97_2990 | annotation not available | Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine | 0.965 |
| DR97_5944 | trpC | DR97_5944 | DR97_3604 | annotation not available | indole-3-glycerol phosphate synthase family protein; Belongs to the TrpC family | 0.985 |
| DR97_5944 | trpD | DR97_5944 | DR97_3603 | annotation not available | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA) | 0.719 |
| DR97_5944 | trpE | DR97_5944 | DR97_3578 | annotation not available | Anthranilate synthase component i; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.822 |
| DR97_5944 | trpF | DR97_5944 | DR97_4820 | annotation not available | N-(5'phosphoribosyl)anthranilate (PRA) isomerase family protein; Belongs to the TrpF family | 0.982 |
| kynA | trpA | DR97_5590 | DR97_2989 | Putative tryptophan oxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety | Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate | 0.943 |
| kynA | trpB | DR97_5590 | DR97_2990 | Putative tryptophan oxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety | Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine | 0.800 |
| pabB | DR97_5944 | DR97_128 | DR97_5944 | pabB: aminodeoxychorismate synthase, component I | annotation not available | 0.830 |
| pabB | phnA | DR97_128 | DR97_946 | pabB: aminodeoxychorismate synthase, component I | Anthranilate synthase component i; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, a precursor for Pseudomonas quinolone signal (2-heptyl-3-hydroxy-4-quinolone; PQS) production which is required to induce the genes for the biosynthesis of the virulence factor pyocyanine (PCN), a characteristic blue-green phenazine pigment produced by P.aeruginosa. In the first step, the glutamine-binding beta subunit (PhnB) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with [...] | 0.856 |
| pabB | phzE1 | DR97_128 | DR97_3697 | pabB: aminodeoxychorismate synthase, component I | annotation not available | 0.830 |
| pabB | trpA | DR97_128 | DR97_2989 | pabB: aminodeoxychorismate synthase, component I | Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate | 0.957 |
| pabB | trpB | DR97_128 | DR97_2990 | pabB: aminodeoxychorismate synthase, component I | Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine | 0.892 |
| pabB | trpC | DR97_128 | DR97_3604 | pabB: aminodeoxychorismate synthase, component I | indole-3-glycerol phosphate synthase family protein; Belongs to the TrpC family | 0.967 |
| pabB | trpD | DR97_128 | DR97_3603 | pabB: aminodeoxychorismate synthase, component I | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA) | 0.947 |
| pabB | trpE | DR97_128 | DR97_3578 | pabB: aminodeoxychorismate synthase, component I | Anthranilate synthase component i; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.836 |
| pabB | trpF | DR97_128 | DR97_4820 | pabB: aminodeoxychorismate synthase, component I | N-(5'phosphoribosyl)anthranilate (PRA) isomerase family protein; Belongs to the TrpF family | 0.896 |
page 1 of 5
