STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcp1Type vi secretion system secreted protein hcp; Required for assembly of the protein secretion apparatus HSI- I. Actively secreted during chronic infection of cystic fibrosis patients (162 aa)    
Predicted Functional Partners:
vgrG1a
Rhs element vgr family protein; Part of the H1 type VI secretion system (H1-T6SS) specialized secretion system, which delivers several virulence factors in both prokaryotic and eukaryotic cells during infection Forms the spike at the tip of the elongating tube formed by haemolysin co-regulated protein 1/Hcp1 . Allows the delivery of the Tse6 toxin to target cells where it exerts its toxicity
 
  
 0.982
DR97_3041
Type vi secretion system protein impc; Type VI secretion protein, EvpB/ family
 
 
 0.972
clpV1
Type vi secretion atpase, clpv1 family; Required for secretion of hcp1 probably by providing the energy source for its translocation
 
  
 0.970
DR97_3040
Type VI secretion system-associated protein
 
 
 0.961
DR97_3044
annotation not available
 
  
 0.935
fha1
annotation not available
 
   
 0.927
DR97_6061
Type vi secretion atpase, clpv1 family; Belongs to the ClpA/ClpB family
 
   
 0.926
DR97_3046
Type vi secretion system protein imph; Uncharacterized protein
 
  
 0.925
DR97_3043
annotation not available
 
    0.918
ppkA
annotation not available
 
  
 0.906
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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