hcp1 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

hcp1

annotation not available (162 aa)

Predicted Functional Partners:

vgrG1

0.981

DR97_3041

0.977

hcpA1

0.969

DR97_3040

0.968

clpV1-1

0.948

DR97_3044

0.934

DR97_3046

0.925

DR97_3043

0.918

DR97_3038

0.907

DR97_3045

0.903

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_3038	DR97_3040	DR97_3038	DR97_3040	annotation not available	Type VI secretion system-associated protein	0.861
DR97_3038	DR97_3041	DR97_3038	DR97_3041	annotation not available	Type VI secretion protein, EvpB/ family	0.858
DR97_3038	DR97_3043	DR97_3038	DR97_3043	annotation not available	annotation not available	0.862
DR97_3038	DR97_3044	DR97_3038	DR97_3044	annotation not available	annotation not available	0.888
DR97_3038	DR97_3045	DR97_3038	DR97_3045	annotation not available	Uncharacterized protein	0.878
DR97_3038	DR97_3046	DR97_3038	DR97_3046	annotation not available	Uncharacterized protein	0.901
DR97_3038	clpV1-1	DR97_3038	DR97_3047	annotation not available	VI_ClpV1- type VI secretion ATPase, ClpV1 family	0.863
DR97_3038	hcp1	DR97_3038	DR97_3042	annotation not available	annotation not available	0.907
DR97_3038	hcpA1	DR97_3038	DR97_510	annotation not available	annotation not available	0.578
DR97_3038	vgrG1	DR97_3038	DR97_3048	annotation not available	VgrG1; vgr_GE- Rhs element Vgr family protein	0.857
DR97_3040	DR97_3038	DR97_3040	DR97_3038	Type VI secretion system-associated protein	annotation not available	0.861
DR97_3040	DR97_3041	DR97_3040	DR97_3041	Type VI secretion system-associated protein	Type VI secretion protein, EvpB/ family	0.998
DR97_3040	DR97_3043	DR97_3040	DR97_3043	Type VI secretion system-associated protein	annotation not available	0.976
DR97_3040	DR97_3044	DR97_3040	DR97_3044	Type VI secretion system-associated protein	annotation not available	0.888
DR97_3040	DR97_3045	DR97_3040	DR97_3045	Type VI secretion system-associated protein	Uncharacterized protein	0.880
DR97_3040	DR97_3046	DR97_3040	DR97_3046	Type VI secretion system-associated protein	Uncharacterized protein	0.887
DR97_3040	clpV1-1	DR97_3040	DR97_3047	Type VI secretion system-associated protein	VI_ClpV1- type VI secretion ATPase, ClpV1 family	0.876
DR97_3040	hcp1	DR97_3040	DR97_3042	Type VI secretion system-associated protein	annotation not available	0.968
DR97_3040	hcpA1	DR97_3040	DR97_510	Type VI secretion system-associated protein	annotation not available	0.484
DR97_3040	vgrG1	DR97_3040	DR97_3048	Type VI secretion system-associated protein	VgrG1; vgr_GE- Rhs element Vgr family protein	0.866

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