STRINGSTRING
lldR_3 protein (Pseudomonas aeruginosa) - STRING interaction network
"lldR_3" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lldR_3annotation not available (228 aa)    
Predicted Functional Partners:
DR97_3078
annotation not available (244 aa)
 
   
  0.816
dctA1
C4-dicarboxylate transport protein 1; Sodium-dicarboxylate symporter family protein; Belongs to the dicarboxylate/amino acid-cation symporter (DAACS) (TC 2.A.23) family (444 aa)
   
   
  0.708
mcbR
annotation not available (226 aa)
    
     
  0.650
DR97_5151
annotation not available (218 aa)
    
     
  0.570
iclR
annotation not available (259 aa)
    
 
  0.550
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5’-adenylate (BirA-bio- 5’-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon (312 aa)
 
     
  0.543
DR97_2116
Ferredoxin; FAD linked oxidase, C-terminal domain protein (938 aa)
   
   
  0.444
ydfH_1
annotation not available (259 aa)
    
     
  0.434
DR97_3566
annotation not available (224 aa)
      
        0.408
vanR
annotation not available (237 aa)
    
     
  0.406
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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