STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_3094Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family (365 aa)    
Predicted Functional Partners:
DR97_3093
annotation not available
 
 0.998
DR97_3095
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family
 
0.997
DR97_3103
annotation not available
 
 
 0.984
pcs
Cdp-alcohol phosphatidyltransferase family protein; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP
      0.672
DR97_3092
annotation not available
       0.652
DR97_3104
2OG-Fe(II) oxygenase superfamily protein; Belongs to the iron/ascorbate-dependent oxidoreductase family
 
     0.595
rbsA
annotation not available
   
 0.594
GuaD
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia
 
    0.540
DR97_509
annotation not available
 
     0.500
DR97_3099
Hydroxydechloroatrazine ethylaminohydrolase; Specifically deaminates 8-Oxoguanine (8-oxoG) to uric acid. 8-oxoG is formed via the oxidation of guanine within DNA by reactive oxygen species and leads, if uncorrected, to the incorporation of 8- oxoG:A mismatches and eventually to G:C to T:A transversions
 
    0.478
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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