STRINGSTRING
exbD protein (Pseudomonas aeruginosa) - STRING interaction network
"exbD" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbDannotation not available (133 aa)    
Predicted Functional Partners:
exbB1
annotation not available (239 aa)
 
  0.999
tonB2
Uncharacterized protein; tonB_Cterm- TonB family C-terminal domain protein (270 aa)
 
 
  0.998
tolQ
tolQ- protein TolQ (231 aa)
 
 
  0.974
tonB
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (343 aa)
 
 
  0.953
exbB2
annotation not available (615 aa)
 
 
  0.927
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (355 aa)
           
  0.926
pfeA3
Ferric enterobactin receptor; tonB-siderophor- TonB-dependent siderophore receptor family protein (746 aa)
 
   
  0.895
pfeA1
Ferric enterobactin receptor; tonB-siderophor- TonB-dependent siderophore receptor family protein (693 aa)
 
   
  0.893
DR97_3148
annotation not available (790 aa)
 
 
  0.803
btuB
tonB-B12- TonB-dependent vitamin B12 receptor (612 aa)
   
   
  0.790
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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