DR97_3164 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DR97_3164

annotation not available (297 aa)

Predicted Functional Partners:

potA1

0.642

DR97_5771

0.635

dmlR_2

0.610

sdsB1

0.601

DR97_4809

0.594

DR97_5887

0.591

yhjC

0.582

DR97_5675

0.561

DR97_6016

0.561

DR97_4345

0.546

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_3164	DR97_4345	DR97_3164	DR97_4345	annotation not available	annotation not available	0.546
DR97_3164	DR97_4809	DR97_3164	DR97_4809	annotation not available	annotation not available	0.594
DR97_3164	DR97_5675	DR97_3164	DR97_5675	annotation not available	annotation not available	0.561
DR97_3164	DR97_5771	DR97_3164	DR97_5771	annotation not available	annotation not available	0.635
DR97_3164	DR97_5887	DR97_3164	DR97_5887	annotation not available	annotation not available	0.591
DR97_3164	DR97_6016	DR97_3164	DR97_6016	annotation not available	annotation not available	0.561
DR97_3164	dmlR_2	DR97_3164	DR97_876	annotation not available	annotation not available	0.610
DR97_3164	potA1	DR97_3164	DR97_3163	annotation not available	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family	0.642
DR97_3164	sdsB1	DR97_3164	DR97_3147	annotation not available	annotation not available	0.601
DR97_3164	yhjC	DR97_3164	DR97_5064	annotation not available	annotation not available	0.582
DR97_4345	DR97_3164	DR97_4345	DR97_3164	annotation not available	annotation not available	0.546
DR97_4345	DR97_4809	DR97_4345	DR97_4809	annotation not available	annotation not available	0.477
DR97_4345	DR97_6016	DR97_4345	DR97_6016	annotation not available	annotation not available	0.494
DR97_4809	DR97_3164	DR97_4809	DR97_3164	annotation not available	annotation not available	0.594
DR97_4809	DR97_4345	DR97_4809	DR97_4345	annotation not available	annotation not available	0.477
DR97_4809	DR97_5771	DR97_4809	DR97_5771	annotation not available	annotation not available	0.473
DR97_5675	DR97_3164	DR97_5675	DR97_3164	annotation not available	annotation not available	0.561
DR97_5675	DR97_5771	DR97_5675	DR97_5771	annotation not available	annotation not available	0.567
DR97_5771	DR97_3164	DR97_5771	DR97_3164	annotation not available	annotation not available	0.635
DR97_5771	DR97_4809	DR97_5771	DR97_4809	annotation not available	annotation not available	0.473

page 1 of 2

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About