STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
madMmalonate_madM: malonate transporter, MadM subunit (254 aa)    
Predicted Functional Partners:
madL
malonate_madL: malonate transporter, MadL subunit
 
  
 0.998
mdcD
Malonate_beta: malonate decarboxylase, beta subunit
 
  
 0.979
mdcE
Malonate_gamma: malonate decarboxylase, gamma subunit
 
  
 0.977
mdcA
mdcA: malonate decarboxylase, alpha subunit
 
    0.975
mdcC
Subunit of malonate decarboxylase, it is an acyl carrier protein to which acetyl and malonyl thioester residues are bound via a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group and turn over during the catalytic mechanism
 
    0.973
mdcB
Triphosphoribosyl-dephospho-coa synthase mdcb; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase
 
    0.970
mdcG
Malonate decarboxylase holo-[acyl-carrier-protein] synthase; Transfers 2'-(5-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-[acyl-carrier-protein] of the malonate decarboxylase to yield holo-[acyl-carrier-protein]
 
    0.955
mdcH
Putative epsilon subunit of malonate decarboxylase; Malonyl CoA-acyl carrier protein transacylase; malonate_mdcH: malonate decarboxylase, epsilon subunit
 
  
 0.954
dctP
Trap transporter solute receptor, dctp family protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system DctPQM involved in C4-dicarboxylates uptake
   
  
 0.887
DR97_3174
Lysr family transcriptional regulator, malonate utilization transcriptional regulator; Belongs to the LysR transcriptional regulatory family
 
  
 0.866
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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