Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AroE | DR97_3195 | DR97_3201 | DR97_3195 | Shikimate dehydrogenase substrate binding domain protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) | annotation not available | 0.542 |
| AroE | DR97_3200 | DR97_3201 | DR97_3200 | Shikimate dehydrogenase substrate binding domain protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) | annotation not available | 0.745 |
| AroE | pcaG | DR97_3201 | DR97_3111 | Shikimate dehydrogenase substrate binding domain protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) | Protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit | 0.643 |
| AroE | pcaH | DR97_3201 | DR97_3110 | Shikimate dehydrogenase substrate binding domain protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) | Protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit | 0.636 |
| AroE | pobA | DR97_3201 | DR97_3204 | Shikimate dehydrogenase substrate binding domain protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) | P-hydroxybenzoate 3-monooxygenase; Catalyzes the incorporation of an atom of dioxygen into p- hydroxybenzoate (p-OHB) to form 3,4-dihydroxybenzoate (3,4DOHB). The reaction occurs in two parts: reduction of the flavin adenine dinucleotide (FAD) in the enzyme by reduced nicotinamide adenine dinucleotide phosphate (NADPH) in response to binding p-hydroxybenzoate to the enzyme and oxidation of reduced FAD with oxygen to form a hydroperoxide, which then oxygenates p-hydroxybenzoate | 0.745 |
| AroE | quiC1 | DR97_3201 | DR97_3199 | Shikimate dehydrogenase substrate binding domain protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) | Xylose isomerase-like tim barrel family protein; Catalyzes the conversion of 3-dehydroshikimate to protocatechuate (3,4-dihydroxybenzoate), a common intermediate of quinate and shikimate degradation pathways. Is required for growth on either quinate or shikimate as a sole carbon source | 0.839 |
| DR97_3195 | AroE | DR97_3195 | DR97_3201 | annotation not available | Shikimate dehydrogenase substrate binding domain protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) | 0.542 |
| DR97_3195 | DR97_3200 | DR97_3195 | DR97_3200 | annotation not available | annotation not available | 0.470 |
| DR97_3195 | pcaG | DR97_3195 | DR97_3111 | annotation not available | Protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit | 0.450 |
| DR97_3195 | quiC1 | DR97_3195 | DR97_3199 | annotation not available | Xylose isomerase-like tim barrel family protein; Catalyzes the conversion of 3-dehydroshikimate to protocatechuate (3,4-dihydroxybenzoate), a common intermediate of quinate and shikimate degradation pathways. Is required for growth on either quinate or shikimate as a sole carbon source | 0.896 |
| DR97_3200 | AroE | DR97_3200 | DR97_3201 | annotation not available | Shikimate dehydrogenase substrate binding domain protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) | 0.745 |
| DR97_3200 | DR97_3195 | DR97_3200 | DR97_3195 | annotation not available | annotation not available | 0.470 |
| DR97_3200 | DR97_4703 | DR97_3200 | DR97_4703 | annotation not available | annotation not available | 0.681 |
| DR97_3200 | lexA | DR97_3200 | DR97_4930 | annotation not available | Repressor lexa; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair | 0.502 |
| DR97_3200 | pcaG | DR97_3200 | DR97_3111 | annotation not available | Protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit | 0.465 |
| DR97_3200 | pcaH | DR97_3200 | DR97_3110 | annotation not available | Protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit | 0.445 |
| DR97_3200 | pobA | DR97_3200 | DR97_3204 | annotation not available | P-hydroxybenzoate 3-monooxygenase; Catalyzes the incorporation of an atom of dioxygen into p- hydroxybenzoate (p-OHB) to form 3,4-dihydroxybenzoate (3,4DOHB). The reaction occurs in two parts: reduction of the flavin adenine dinucleotide (FAD) in the enzyme by reduced nicotinamide adenine dinucleotide phosphate (NADPH) in response to binding p-hydroxybenzoate to the enzyme and oxidation of reduced FAD with oxygen to form a hydroperoxide, which then oxygenates p-hydroxybenzoate | 0.508 |
| DR97_3200 | quiC1 | DR97_3200 | DR97_3199 | annotation not available | Xylose isomerase-like tim barrel family protein; Catalyzes the conversion of 3-dehydroshikimate to protocatechuate (3,4-dihydroxybenzoate), a common intermediate of quinate and shikimate degradation pathways. Is required for growth on either quinate or shikimate as a sole carbon source | 0.890 |
| DR97_3200 | recN | DR97_3200 | DR97_2107 | annotation not available | Dna repair protein recn (recombination protein n); May be involved in recombinational repair of damaged DNA | 0.671 |
| DR97_4703 | DR97_3200 | DR97_4703 | DR97_3200 | annotation not available | annotation not available | 0.681 |
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