STRINGSTRING
btr_6 protein (Pseudomonas aeruginosa) - STRING interaction network
"btr_6" - annotation not available in Pseudomonas aeruginosa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btr_6annotation not available (288 aa)    
Predicted Functional Partners:
pobA
P-hydroxybenzoate hydroxylase; Pbenz_hydroxyl- 4-hydroxybenzoate 3-monooxygenase (394 aa)
 
   
  0.978
pcaH
Protocat_beta- protocatechuate 3,4-dioxygenase, beta subunit (239 aa)
 
     
  0.955
pcaG
Protocat_alph- protocatechuate 3,4-dioxygenase, alpha subunit (201 aa)
 
     
  0.954
pcaQ
Uncharacterized protein; TF_pcaQ- pca operon transcription factor PcaQ (305 aa)
 
   
  0.947
catR
annotation not available (290 aa)
     
   
  0.801
pcaR
Pca regulon regulatory protein; pcaR_pcaU- beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family protein (279 aa)
 
     
  0.645
iclR
annotation not available (259 aa)
 
     
  0.628
vanA
annotation not available (351 aa)
 
   
  0.559
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (913 aa)
         
  0.552
pcaB
protocat_pcaB- 3-carboxy-cis,cis-muconate cycloisomerase (459 aa)
 
   
  0.530
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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