DR97_3211 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DR97_3211

UbiD-like decarboxylase; Catalyzes the reversible decarboxylation of aromatic carboxylic acids (496 aa)

Predicted Functional Partners:

ubiX

0.997

ubiA

0.994

DR97_2590

0.915

ubiG

0.915

ubiH

0.886

DR97_2607

0.856

ubiC

0.818

DR97_244

0.750

DR97_3210

0.726

ubiE

0.724

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_244	DR97_2607	DR97_244	DR97_2607	annotation not available	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis; Belongs to the UbiD family	0.750
DR97_244	DR97_3211	DR97_244	DR97_3211	annotation not available	UbiD-like decarboxylase; Catalyzes the reversible decarboxylation of aromatic carboxylic acids	0.750
DR97_2590	DR97_2607	DR97_2590	DR97_2607	2-octaprenyl-3-methyl-6-methoxy-1, 4-benzoquinolhydroxylase; ubi-OHases- ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis; Belongs to the UbiD family	0.928
DR97_2590	DR97_3211	DR97_2590	DR97_3211	2-octaprenyl-3-methyl-6-methoxy-1, 4-benzoquinolhydroxylase; ubi-OHases- ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein	UbiD-like decarboxylase; Catalyzes the reversible decarboxylation of aromatic carboxylic acids	0.915
DR97_2590	ubiA	DR97_2590	DR97_2729	2-octaprenyl-3-methyl-6-methoxy-1, 4-benzoquinolhydroxylase; ubi-OHases- ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein	4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate	0.780
DR97_2590	ubiE	DR97_2590	DR97_2418	2-octaprenyl-3-methyl-6-methoxy-1, 4-benzoquinolhydroxylase; ubi-OHases- ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2)	0.676
DR97_2590	ubiG	DR97_2590	DR97_4765	2-octaprenyl-3-methyl-6-methoxy-1, 4-benzoquinolhydroxylase; ubi-OHases- ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein	Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family	0.980
DR97_2590	ubiH	DR97_2590	DR97_2592	2-octaprenyl-3-methyl-6-methoxy-1, 4-benzoquinolhydroxylase; ubi-OHases- ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein	ubiH- 2-polyprenyl-6-methoxyphenol 4-hydroxylase	0.899
DR97_2590	ubiX	DR97_2590	DR97_3848	2-octaprenyl-3-methyl-6-methoxy-1, 4-benzoquinolhydroxylase; ubi-OHases- ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein	Flavin prenyltransferase UbiX; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN	0.933
DR97_2607	DR97_244	DR97_2607	DR97_244	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis; Belongs to the UbiD family	annotation not available	0.750
DR97_2607	DR97_2590	DR97_2607	DR97_2590	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis; Belongs to the UbiD family	2-octaprenyl-3-methyl-6-methoxy-1, 4-benzoquinolhydroxylase; ubi-OHases- ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein	0.928
DR97_2607	DR97_3211	DR97_2607	DR97_3211	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis; Belongs to the UbiD family	UbiD-like decarboxylase; Catalyzes the reversible decarboxylation of aromatic carboxylic acids	0.856
DR97_2607	ubiA	DR97_2607	DR97_2729	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis; Belongs to the UbiD family	4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate	0.994
DR97_2607	ubiC	DR97_2607	DR97_2728	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis; Belongs to the UbiD family	Probable chorismate pyruvate-lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4- hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family	0.818
DR97_2607	ubiE	DR97_2607	DR97_2418	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis; Belongs to the UbiD family	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2)	0.724
DR97_2607	ubiG	DR97_2607	DR97_4765	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis; Belongs to the UbiD family	Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family	0.925
DR97_2607	ubiH	DR97_2607	DR97_2592	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis; Belongs to the UbiD family	ubiH- 2-polyprenyl-6-methoxyphenol 4-hydroxylase	0.912
DR97_2607	ubiX	DR97_2607	DR97_3848	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis; Belongs to the UbiD family	Flavin prenyltransferase UbiX; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN	0.997
DR97_3210	DR97_3211	DR97_3210	DR97_3211	annotation not available	UbiD-like decarboxylase; Catalyzes the reversible decarboxylation of aromatic carboxylic acids	0.726
DR97_3211	DR97_244	DR97_3211	DR97_244	UbiD-like decarboxylase; Catalyzes the reversible decarboxylation of aromatic carboxylic acids	annotation not available	0.750

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About