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ycdT_4 protein (Pseudomonas aeruginosa) - STRING interaction network
"ycdT_4" - GGDEF: diguanylate cyclase domain protein in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycdT_4GGDEF- diguanylate cyclase domain protein (323 aa)    
Predicted Functional Partners:
DR97_5719
annotation not available (285 aa)
 
  0.942
DR97_5603
annotation not available (587 aa)
 
  0.933
rocR
annotation not available (392 aa)
 
  0.919
bvgS
annotation not available (1212 aa)
 
 
  0.871
DR97_4677
Putative EAL domain/GGDEF domain-containing protein; GGDEF- diguanylate cyclase domain protein (582 aa)
 
  0.867
gacS
annotation not available (925 aa)
 
 
  0.865
lapD
annotation not available (650 aa)
 
 
  0.816
fimX
GGDEF- diguanylate cyclase domain protein (691 aa)
 
 
  0.816
DR97_694
annotation not available (858 aa)
 
  0.805
arr
annotation not available (525 aa)
 
     
  0.800
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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