STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprEannotation not available (460 aa)    
Predicted Functional Partners:
oprC
Putative copper transport outer membrane porin OprC; tonB-copper: TonB-dependent copper receptor
  
   
 0.886
oprF
annotation not available
      
 0.854
oprG
annotation not available
      
 0.853
oprH
PhoP/Q and low Mg2+ inducible outer membrane protein H1; OMP85_target: outer membrane insertion C-terminal signal domain protein
      
 0.853
DR97_4033
DNA polymerase III subunit chi
  
     0.697
DR97_3806
Uncharacterized protein
  
     0.667
DR97_4367
Uncharacterized protein
  
     0.639
DR97_4927
annotation not available
  
     0.632
DR97_5138
Chromosome partitioning protein ParA
  
     0.611
DR97_3875
Domain of unknown function family protein
  
     0.605
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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