Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_3178 | DR97_3757 | DR97_3178 | DR97_3757 | Aminotransferase class-iii family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family | annotation not available | 0.900 |
DR97_3178 | aguB | DR97_3178 | DR97_3255 | Aminotransferase class-iii family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family | N-carbamoylputrescine amidohydrolase; agmatine_aguB: N-carbamoylputrescine amidase | 0.904 |
DR97_3178 | speC | DR97_3178 | DR97_1698 | Aminotransferase class-iii family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family | Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family | 0.907 |
DR97_3178 | speE1 | DR97_3178 | DR97_200 | Aminotransferase class-iii family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family | Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine | 0.900 |
DR97_3178 | speE2 | DR97_3178 | DR97_2118 | Aminotransferase class-iii family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family | Hypothetical protein; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine | 0.900 |
DR97_3178 | spuC | DR97_3178 | DR97_3261 | Aminotransferase class-iii family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family | Beta-eliminating lyase family protein; Involved in the putrescine catabolism. Catalyzes the transfer of the amino group from putrescine to pyruvate to yield 4-aminobutanal and alanine | 0.807 |
DR97_3757 | DR97_3178 | DR97_3757 | DR97_3178 | annotation not available | Aminotransferase class-iii family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family | 0.900 |
DR97_3757 | aguB | DR97_3757 | DR97_3255 | annotation not available | N-carbamoylputrescine amidohydrolase; agmatine_aguB: N-carbamoylputrescine amidase | 0.903 |
DR97_3757 | speC | DR97_3757 | DR97_1698 | annotation not available | Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family | 0.904 |
DR97_3757 | speE1 | DR97_3757 | DR97_200 | annotation not available | Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine | 0.900 |
DR97_3757 | speE2 | DR97_3757 | DR97_2118 | annotation not available | Hypothetical protein; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine | 0.900 |
DR97_3757 | spuC | DR97_3757 | DR97_3261 | annotation not available | Beta-eliminating lyase family protein; Involved in the putrescine catabolism. Catalyzes the transfer of the amino group from putrescine to pyruvate to yield 4-aminobutanal and alanine | 0.900 |
DR97_4155 | aguA | DR97_4155 | DR97_3254 | NADPH dehydrogenase; NADH:flavin oxidoreductase / NADH oxidase family protein | Agmatine deiminase; Mediates the hydrolysis of agmatine into N- carbamoylputrescine in the arginine decarboxylase (ADC) pathway of putrescine biosynthesis, a basic polyamine | 0.579 |
DR97_4155 | aguB | DR97_4155 | DR97_3255 | NADPH dehydrogenase; NADH:flavin oxidoreductase / NADH oxidase family protein | N-carbamoylputrescine amidohydrolase; agmatine_aguB: N-carbamoylputrescine amidase | 0.857 |
DR97_4155 | aguR | DR97_4155 | DR97_3256 | NADPH dehydrogenase; NADH:flavin oxidoreductase / NADH oxidase family protein | annotation not available | 0.848 |
DR97_4155 | speA | DR97_4155 | DR97_2189 | NADPH dehydrogenase; NADH:flavin oxidoreductase / NADH oxidase family protein | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine | 0.426 |
DR97_4155 | speC | DR97_4155 | DR97_1698 | NADPH dehydrogenase; NADH:flavin oxidoreductase / NADH oxidase family protein | Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family | 0.485 |
aguA | DR97_4155 | DR97_3254 | DR97_4155 | Agmatine deiminase; Mediates the hydrolysis of agmatine into N- carbamoylputrescine in the arginine decarboxylase (ADC) pathway of putrescine biosynthesis, a basic polyamine | NADPH dehydrogenase; NADH:flavin oxidoreductase / NADH oxidase family protein | 0.579 |
aguA | aguB | DR97_3254 | DR97_3255 | Agmatine deiminase; Mediates the hydrolysis of agmatine into N- carbamoylputrescine in the arginine decarboxylase (ADC) pathway of putrescine biosynthesis, a basic polyamine | N-carbamoylputrescine amidohydrolase; agmatine_aguB: N-carbamoylputrescine amidase | 0.999 |
aguA | aguR | DR97_3254 | DR97_3256 | Agmatine deiminase; Mediates the hydrolysis of agmatine into N- carbamoylputrescine in the arginine decarboxylase (ADC) pathway of putrescine biosynthesis, a basic polyamine | annotation not available | 0.907 |
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