potF3 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Cooccurence

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[Homology]

Score

potF3

annotation not available (365 aa)

Predicted Functional Partners:

potH

0.998

potG

0.997

potI

0.997

potC

0.841

DR97_3288

0.832

DR97_3161

0.828

potB

0.816

DR97_3289

0.805

DR97_3162

0.803

hisQ3

0.629

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_3161	DR97_3162	DR97_3161	DR97_3162	annotation not available	annotation not available	0.943
DR97_3161	DR97_3289	DR97_3161	DR97_3289	annotation not available	annotation not available	0.599
DR97_3161	potB	DR97_3161	DR97_4331	annotation not available	annotation not available	0.616
DR97_3161	potF3	DR97_3161	DR97_3263	annotation not available	annotation not available	0.828
DR97_3161	potG	DR97_3161	DR97_3264	annotation not available	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	0.752
DR97_3161	potH	DR97_3161	DR97_3265	annotation not available	annotation not available	0.867
DR97_3162	DR97_3161	DR97_3162	DR97_3161	annotation not available	annotation not available	0.943
DR97_3162	DR97_3288	DR97_3162	DR97_3288	annotation not available	annotation not available	0.600
DR97_3162	potC	DR97_3162	DR97_4330	annotation not available	annotation not available	0.880
DR97_3162	potF3	DR97_3162	DR97_3263	annotation not available	annotation not available	0.803
DR97_3162	potG	DR97_3162	DR97_3264	annotation not available	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	0.743
DR97_3162	potI	DR97_3162	DR97_3266	annotation not available	annotation not available	0.861
DR97_3288	DR97_3162	DR97_3288	DR97_3162	annotation not available	annotation not available	0.600
DR97_3288	DR97_3289	DR97_3288	DR97_3289	annotation not available	annotation not available	0.990
DR97_3288	potB	DR97_3288	DR97_4331	annotation not available	annotation not available	0.921
DR97_3288	potC	DR97_3288	DR97_4330	annotation not available	annotation not available	0.819
DR97_3288	potF3	DR97_3288	DR97_3263	annotation not available	annotation not available	0.832
DR97_3288	potG	DR97_3288	DR97_3264	annotation not available	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	0.752
DR97_3288	potH	DR97_3288	DR97_3265	annotation not available	annotation not available	0.591
DR97_3289	DR97_3161	DR97_3289	DR97_3161	annotation not available	annotation not available	0.599

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